Solyc06g060010.3.1 (Solyc06g060010.3)


Aliases : Solyc06g060010.3

Description : 16.1.5 secondary metabolism.isoprenoids.terpenoids Encodes an (E,E)-alpha-farnesene synthase in the Col ecotype of Arabidopsis. This enzyme can also catalyze the formation of (E)-beta-ocimene as well as trace amounts of myrcene and other related compounds in vitro. The cytosolic localization of the protein may make it favor (E,E)-alpha-farnesene biosynthesis because the precursor of this product, FPP, is primarily cytosolic. Transcript levels for this gene increase in response to treatment with the jasmonic acid mimic coronalon or in response to the insect <i>Plutella xylostella</i>. TPS03 transcripts can also be detected in flowers. A similar protein from the C24 ecotype with one amino acid change (S267F) has a different substrate specificity.


Gene families : OG_01_0000052 (Gene family) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc06g060010.3.1
Cluster HCCA cluster: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AT1G31950 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.02 Gene family
AT1G33750 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.02 Gene family
AT2G23230 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.06 Gene family
AT3G14540 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.03 Gene family
AT3G29190 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.03 Gene family
AT4G15870 ATTS1, TS1 terpene synthase 1 0.03 Gene family
Solyc06g059885.1.1 Solyc06g059885.1 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.02 Gene family
Solyc12g006570.2.1 Solyc12g006570.2 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
Zm00001d024481 GRMZM2G074309 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family
Zm00001d029195 GRMZM2G038153 16.1.5 secondary metabolism.isoprenoids.terpenoids... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0010333 terpene synthase activity IEA InterProScan
MF GO:0016829 lyase activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 68 254
No external refs found!