Solyc04g076620.3.1 (Solyc04g076620.3)

Aliases : Solyc04g076620.3

Description : protein.degradation.ubiquitin.E3.HECT encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. ubiquitin-protein ligase 1 (UPL1)

Gene families : OG_01_0001645 (Gene family) Phylogenetic Tree(s): OG0001645_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR network (cutoff 100): Solyc04g076620.3.1
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G55860 UPL1 ubiquitin-protein ligase 1 0.27 Gene family
AT1G70320 UPL2 ubiquitin-protein ligase 2 0.2 Gene family
Cre01.g012450 No alias protein.degradation.ubiquitin.E3.HECT... 0.08 Gene family
GSVIVT01009206001 No alias protein.degradation.ubiquitin.E3.HECT... 0.17 Gene family
GSVIVT01009208001 No alias protein.degradation.ubiquitin.E3.HECT... 0.1 Gene family
GSVIVT01014697001 No alias protein.degradation.ubiquitin.E3.HECT... 0.07 Gene family
GSVIVT01014698001 No alias protein.degradation.ubiquitin.E3.HECT... 0.09 Gene family
LOC_Os12g24080 Os12g0428600 protein.degradation.ubiquitin.E3.HECT... 0.03 Gene family
MA_20049g0010 No alias protein.degradation.ubiquitin.E3.HECT... 0.09 Gene family
MA_20049g0020 No alias protein.degradation.ubiquitin.E3.HECT... 0.11 Gene family
MA_7295g0020 No alias protein.degradation.ubiquitin.E3.HECT... 0.04 Gene family
Smo154179 PACid_15423310 protein.degradation.ubiquitin.E3.HECT... 0.12 Gene family
Zm00001d005127 GRMZM2G021299 protein.degradation.ubiquitin.E3.HECT... 0.16 Gene family
Zm00001d041105 GRMZM2G411536 protein.degradation.ubiquitin.E3.HECT... 0.12 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000569 HECT_dom 3281 3591
IPR002156 RNaseH_domain 3844 3962
IPR025527 HUWE1/Rev1_UBM 2585 2616
IPR025527 HUWE1/Rev1_UBM 2547 2578
IPR025527 HUWE1/Rev1_UBM 2511 2538
IPR010309 E3_Ub_ligase_DUF908 106 154
IPR010309 E3_Ub_ligase_DUF908 206 379
IPR015940 UBA 1273 1310
IPR010314 E3_Ub_ligase_DUF913 442 775
No external refs found!