Aspi01Gene68989.t2 (SOC1, AGL20, ATSOC1,...)

Aliases : SOC1, AGL20, ATSOC1, Aspi01Gene68989

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene68989.t2
Cluster	HCCA: Cluster_38

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00218870	ANR1, AGL44,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AMTR_s00071p00198970	XAL1, AGL12,...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	OrthoFinder output from all 47 species
AMTR_s00089p00081270	PI,...	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT1G77950	AGL67	AGAMOUS-like 67	0.03	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT2G45650	AGL6	AGAMOUS-like 6	0.03	OrthoFinder output from all 47 species
AT2G45660	SOC1, AGL20, ATSOC1	AGAMOUS-like 20	0.02	OrthoFinder output from all 47 species
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.02	OrthoFinder output from all 47 species
Aev_g20345	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Als_g13176	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g50829	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g19952	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g32969	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Aop_g37797	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene13944.t1	AGL18, Aspi01Gene13944	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene50728.t1	STK, AGL11,...	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0003.g007732	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Cba_g47174	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.07G094900.1	AGL7, AP1,...	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.12G051300.1	GL19, AGL19,...	not classified & original description: pacid=50601537...	0.01	OrthoFinder output from all 47 species
Ceric.12G051800.1	GL19, AGL19,...	MADS/AGL-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.34G033600.1	AGL16, Ceric.34G033600	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g08553	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g34128	AGL21	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g17972	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008560001	SOC1, AGL20, ATSOC1	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
GSVIVT01015649001	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01022182001	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01035477001	AGL30	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01038474001	AGL16	RNA biosynthesis.transcriptional activation.MADS box...	0.01	OrthoFinder output from all 47 species
Gb_19897	AGL16	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Gb_41550	No alias	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os03g08754.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os03g54170.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os06g06750.1	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g11330.1	SVP, AGL22,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g23980.1	AGL16, LOC_Os06g23980	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
LOC_Os07g01820.1	AGL7, AP1, LOC_Os07g01820	transcription factor (MADS/AGL)	0.01	OrthoFinder output from all 47 species
MA_13933g0010	AGL13	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_16629g0010	ANR1, AGL44	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_18048g0010	AGL21	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_19296g0010	AGL9, SEP3	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_333471g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_412147g0010	SOC1, AGL20, ATSOC1	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_51624g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_6544g0010	STK, AGL11	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.04	OrthoFinder output from all 47 species
MA_75656g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Msp_g06990	AGL16	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g11231	GL19, AGL19	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g04651	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g43918	AGL16	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g44138	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g58877	AGL30	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g08455	AGL21	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012202	No alias	MADS/AGL-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g15626	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g50341	No alias	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g106710.1.1	AGL62, Solyc01g106710	component MED19 of head module of MEDIATOR transcription...	0.02	OrthoFinder output from all 47 species
Solyc02g091550.2.1	AGL21, Solyc02g091550	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc06g059970.4.1	PI, Solyc06g059970	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Solyc10g017630.3.1	SOC1, AGL20,...	MADS-box protein SOC1 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Spa_g01718	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g10405	AGL2, SEP1	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10574	STK, AGL11	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e003667_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e006950_P001	AGL32, TT16,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e012024_P001	AGL4, SEP2,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e019029_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e031267_P003	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e033144_P001	AGL29, Zm00001e033144	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e034629_P001	AGL9, SEP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e036159_P001	AGL24, Zm00001e036159	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e039774_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	83	171
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Aspi01Gene68989.t2 (SOC1, AGL20, ATSOC1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation