Aliases : Solyc02g081900.3
Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a chloroplast RNA editing factor. ORGANELLE TRANSCRIPT PROCESSING 84 (OTP84)
Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR network (cutoff 100): Solyc02g081900.3.1 | |
Cluster | HCCA cluster: Cluster_92 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G18485 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Gene family | |
AT3G63370 | OTP86 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Gene family | |
AT5G66520 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Gene family | |
GSVIVT01009789001 | No alias | No description available | 0.03 | Gene family | |
GSVIVT01011333001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.06 | Gene family | |
GSVIVT01031251001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.07 | Gene family | |
GSVIVT01032721001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
GSVIVT01033190001 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.1 | Gene family | |
LOC_Os01g10800 | Os01g0205200 | No description available | 0.04 | Gene family | |
LOC_Os01g41650 | Os01g0600400 | No description available | 0.02 | Gene family | |
LOC_Os01g62910 | Os01g0848300 | No description available | 0.03 | Gene family | |
LOC_Os03g04390 | Os03g0136700 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
LOC_Os04g02850 | Os04g0118700 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.06 | Gene family | |
LOC_Os04g39410 | Os04g0469400 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.04 | Gene family | |
LOC_Os05g50950 | Os05g0586900 | No description available | 0.04 | Gene family | |
MA_10426444g0010 | No alias | No description available | 0.03 | Gene family | |
MA_123466g0010 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.03 | Gene family | |
MA_20622g0010 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
MA_230261g0010 | No alias | No description available | 0.01 | Gene family | |
MA_73895g0010 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.01 | Gene family | |
MA_8210920g0010 | No alias | No description available | 0.01 | Gene family | |
MA_953793g0020 | No alias | No description available | 0.02 | Gene family | |
Smo45004 | PACid_15410414 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Zm00001d025656 | No alias | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Zm00001d027555 | GRMZM2G176523 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.04 | Gene family | |
Zm00001d031535 | GRMZM2G076257 | No description available | 0.05 | Gene family | |
Zm00001d032185 | GRMZM2G161368 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Zm00001d037036 | GRMZM2G129783 | 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... | 0.02 | Gene family | |
Zm00001d039193 | GRMZM2G440349 | No description available | 0.02 | Gene family |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 755 | 879 |
IPR002885 | Pentatricopeptide_repeat | 579 | 628 |
IPR002885 | Pentatricopeptide_repeat | 367 | 412 |
IPR002885 | Pentatricopeptide_repeat | 263 | 309 |
IPR002885 | Pentatricopeptide_repeat | 656 | 682 |
IPR002885 | Pentatricopeptide_repeat | 237 | 258 |
IPR002885 | Pentatricopeptide_repeat | 469 | 495 |
IPR002885 | Pentatricopeptide_repeat | 162 | 191 |
IPR002885 | Pentatricopeptide_repeat | 441 | 468 |
No external refs found! |