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- Aspi01Gene67594.t1
Aspi01Gene67594.t1 (Aspi01Gene67594)
Aliases : Aspi01Gene67594
Description : non-SNARE-type phytolongin & original description: none
Expression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
| Type | Description | Actions |
| Neighborhood | HRR: Aspi01Gene67594.t1 | |
Expression Context Conservation (ECC)
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
| AMTR_s00059p00069290 | evm_27.TU.AmTr_v1... | Vesicle trafficking.Coat protein I (COPI) coatomer... | Ala_g27961 details <td>0.03</td> <td>OrthoFinder output from all 47 species</td> <td><a href="/ecc/graph_pair/42450991" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/2220340/62/21" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2629" data-toggle="tooltip" data-placement="top" title=""A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt]">GO:0003674</a></td> <td class="col-xs-6">molecular_function</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/3922" data-toggle="tooltip" data-placement="top" title=""The action of a molecule that contributes to the structural integrity of a complex." [GOC:mah, GOC:vw]">GO:0005198</a></td> <td class="col-xs-6">structural molecule activity</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/4161" data-toggle="tooltip" data-placement="top" title=""A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao1337158144]">GO:0005575</a></td> <td class="col-xs-6">cellular_component</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5269" data-toggle="tooltip" data-placement="top" title=""The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or a transporter complex, a pore or a motor protein." [GOC:dos, GOC:dph, GOC:jl, GOC:mah]">GO:0006810</a></td> <td class="col-xs-6">transport</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5332" data-toggle="tooltip" data-placement="top" title=""The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell." [GOC:mah]">GO:0006886</a></td> <td class="col-xs-6">intracellular protein transport</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6088" data-toggle="tooltip" data-placement="top" title=""Any process in which a protein is transported to, or maintained in, a specific location." [GOC:ai]">GO:0008104</a></td> <td class="col-xs-6">protein localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6130" data-toggle="tooltip" data-placement="top" title=""A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]">GO:0008150</a></td> <td class="col-xs-6">biological_process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7802" data-toggle="tooltip" data-placement="top" title=""Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete]">GO:0009987</a></td> <td class="col-xs-6">cellular process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/9036" data-toggle="tooltip" data-placement="top" title=""The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:ai]">GO:0015031</a></td> <td class="col-xs-6">protein transport</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/10025" data-toggle="tooltip" data-placement="top" title=""A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane." [GOC:ai, GOC:mah, ISBN:08789310662000]">GO:0016192</a></td> <td class="col-xs-6">vesicle-mediated transport</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/13488" data-toggle="tooltip" data-placement="top" title=""Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules." [GOC:mah]">GO:0030117</a></td> <td class="col-xs-6">membrane coat</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/13491" data-toggle="tooltip" data-placement="top" title=""A membrane coat found on a coated vesicle." [GOC:mah]">GO:0030120</a></td> <td class="col-xs-6">vesicle coat</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/13497" data-toggle="tooltip" data-placement="top" title=""One of two multimeric complexes that forms a membrane vesicle coat. The mammalian COPI subunits are called alpha-, beta-, beta'-, gamma-, delta-, epsilon- and zeta-COP. Vesicles with COPI coats are found associated with Golgi membranes at steady state." [GOC:mah, PMID:11252894]">GO:0030126</a></td> <td class="col-xs-6">COPI vesicle coat</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">Interproscan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/16156" data-toggle="tooltip" data-placement="top" title=""A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah]">GO:0032991</a></td> <td class="col-xs-6">protein-containing complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/16200" data-toggle="tooltip" data-placement="top" title=""Any process in which a macromolecule is transported to, or maintained in, a specific location." [GOC:mah]">GO:0033036</a></td> <td class="col-xs-6">macromolecule localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22701" data-toggle="tooltip" data-placement="top" title=""The directed movement of a protein to a specific location." [GOC:bf]">GO:0045184</a></td> <td class="col-xs-6">establishment of protein localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/24232" data-toggle="tooltip" data-placement="top" title=""The directed movement of substances within a cell." [GOC:ai]">GO:0046907</a></td> <td class="col-xs-6">intracellular transport</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27251" data-toggle="tooltip" data-placement="top" title=""Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation." [GOC:ai, GOC:dos]">GO:0051179</a></td> <td class="col-xs-6">localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27302" data-toggle="tooltip" data-placement="top" title=""Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." [GOC:ai, GOC:dos]">GO:0051234</a></td> <td class="col-xs-6">establishment of localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27675" data-toggle="tooltip" data-placement="top" title=""A cellular localization process whereby a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within a cell including the localization of substances or cellular entities to the cell membrane." [GOC:tb, GOC:vw]">GO:0051641</a></td> <td class="col-xs-6">cellular localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/27683" data-toggle="tooltip" data-placement="top" title=""Any process, occuring in a cell, that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation." [GOC:ai, GOC:dos, GOC:dph, GOC:tb]">GO:0051649</a></td> <td class="col-xs-6">establishment of localization in cell</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/31747" data-toggle="tooltip" data-placement="top" title=""Any process in which a macromolecule is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell." [GOC:mah]">GO:0070727</a></td> <td class="col-xs-6">cellular macromolecule localization</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/32689" data-toggle="tooltip" data-placement="top" title=""The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon." [GOC:mah]">GO:0071702</a></td> <td class="col-xs-6">organic substance transport</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/32692" data-toggle="tooltip" data-placement="top" title=""The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore." [GOC:mah]">GO:0071705</a></td> <td class="col-xs-6">nitrogen compound transport</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/36057" data-toggle="tooltip" data-placement="top" title=""Any protein complex that is part of a membrane." [GOC:dos]">GO:0098796</a></td> <td class="col-xs-6">membrane protein complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No Predicted GO terms available for this sequence</p></td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/2110">IPR002553</a></td> <td class="col-xs-5">Clathrin/coatomer_adapt-like_N</td> <td class="col-xs-2">31</td> <td class="col-xs-2">544</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/34465">IPR042855</a></td> <td class="col-xs-5">V_SNARE_CC</td> <td class="col-xs-2">1174</td> <td class="col-xs-2">1249</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/9365">IPR010908</a></td> <td class="col-xs-5">Longin_dom</td> <td class="col-xs-2">1011</td> <td class="col-xs-2">1067</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/25585">IPR032154</a></td> <td class="col-xs-5">Coatomer_g_Cpla</td> <td class="col-xs-2">774</td> <td class="col-xs-2">878</td> </tr> <tr> <td class="col-xs-3"><a href="/interpro/view/11086">IPR013040</a></td> <td class="col-xs-5">Coatomer_gsu_app_Ig-like_dom</td> <td class="col-xs-2">627</td> <td class="col-xs-2">771</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script>
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if (conversion[data.datasets[a.datasetIndex].label] > conversion[data.datasets[b.datasetIndex].label]) {
return -1
} else if (conversion[data.datasets[a.datasetIndex].label] < conversion[data.datasets[b.datasetIndex].label]) {
return 1
} else {
return 0
}
},
callbacks: {
afterTitle: function(tooltipItems, data) {
if (data.counts[tooltipItems[0].index] == null) {
return null;
} else {
if (data.counts[tooltipItems[0].index] == 1) {
return '(1 sample)';
} else {
return '(' + data.counts[tooltipItems[0].index] + ' samples)';
}
}
},
label: function(tooltipItems, data) {
return data.datasets[tooltipItems.datasetIndex].label + ': ' + tooltipItems.yLabel.toFixed(2);
}
}
}
var myChart = new Chart(ctx, data);
if (myChart.options.zoom.enabled) {
$("#enable_zoom").addClass("btn-success");
$("#enable_zoom").removeClass("btn-danger");
$("#enable_zoom").removeClass("btn-default");
} else {
$("#enable_zoom").addClass("btn-danger");
$("#enable_zoom").removeClass("btn-success");
$("#enable_zoom").removeClass("btn-default");
}
$("#enable_zoom").click( function(ev) {
ev.preventDefault();
myChart.options.zoom.enabled = ! myChart.options.zoom.enabled;
if (myChart.options.zoom.enabled) {
$(this).addClass("btn-success");
$(this).removeClass("btn-danger");
$(this).removeClass("btn-default");
} else {
$(this).addClass("btn-danger");
$(this).removeClass("btn-success");
$(this).removeClass("btn-default");
}
});
if (myChart.options.pan.enabled) {
$("#enable_pan").addClass("btn-success");
$("#enable_pan").removeClass("btn-danger");
$("#enable_pan").removeClass("btn-default");
} else {
$("#enable_pan").addClass("btn-danger");
$("#enable_pan").removeClass("btn-success");
$("#enable_pan").removeClass("btn-default");
}
$("#enable_pan").click( function(ev) {
ev.preventDefault();
myChart.options.pan.enabled = ! myChart.options.pan.enabled;
if (myChart.options.pan.enabled) {
$(this).addClass("btn-success");
$(this).removeClass("btn-danger");
$(this).removeClass("btn-default");
} else {
$(this).addClass("btn-danger");
$(this).removeClass("btn-success");
$(this).removeClass("btn-default");
}
});
});
});
</script> </body> </html>
