Aliases : ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1, Aspi01Gene43773
Description : basal Sigma-type transcription factor & original description: none
Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00009p00072720 | SIGF, SIG6,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00011p00266100 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g013131 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g088986 | ATSIG1, SIGB,... | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Als_g61402 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g09016 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Aob_g09050 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s1110.g097727 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g03940 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g03997 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g05885 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G009200.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.02G083900.1 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.12G082200.1 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g05693 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.04 | OrthoFinder output from all 47 species | |
Dde_g23470 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01024261001 | SIGB, SIG2,... | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01035330001 | SIGC, SIG3 | RNA biosynthesis.organelle... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os08g14450.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Msp_g07421 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ore_g25320 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g32531 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.05 | OrthoFinder output from all 47 species | |
Ppi_g06448 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g30557 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0017.g007071 | ATSIG1, SIGB,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0198.g025553 | SIGB, SIG2,... | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g19255 | No alias | basal Sigma-type transcription factor & original... | 0.03 | OrthoFinder output from all 47 species | |
Smo117159 | ATSIG1, SIGB,... | RNA biosynthesis.organelle... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g081490.3.1 | ATSIG1, SIGB,... | basal transcription factor (Sigma) | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g097320.3.1 | SIGB, SIG2,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species | |
Solyc09g008040.3.1 | SIGF, SIG6,... | basal transcription factor (Sigma) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEA | Interproscan |
BP | GO:0006352 | DNA-templated transcription initiation | IEA | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
No external refs found! |