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  5. Aspi01Gene40723.t1

Aspi01Gene40723.t1 (AMY3, ATAMY3, Aspi01Gene40723)


Aliases : AMY3, ATAMY3, Aspi01Gene40723

Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene40723.t1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00125590 AMY3, ATAMY3,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
AT1G69830 AMY3, ATAMY3 alpha-amylase-like 3 0.04 OrthoFinder output from all 47 species
Aev_g09857 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28422 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g22213 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75148 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01020069001 AMY3, ATAMY3 Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
GSVIVT01031746001 AMY1, ATAMY1 Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
LOC_Os01g25510.1 AMY1, ATAMY1,... Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os02g52710.1 AMY1, ATAMY1,... alpha amylase 0.03 OrthoFinder output from all 47 species
Len_g01238 AMY2, ATAMY2 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Mp2g22120.1 AMY2, ATAMY2 alpha amylase 0.02 OrthoFinder output from all 47 species
Mp3g22820.1 AMY3, ATAMY3 alpha amylase 0.03 OrthoFinder output from all 47 species
Sam_g16056 No alias alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003799_P001 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006047 Glyco_hydro_13_cat_dom 623 905
IPR012850 A-amylase_bs_C 926 988
No external refs found!