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  5. Aspi01Gene38425.t1

Aspi01Gene38425.t1 (AMY2, ATAMY2, Aspi01Gene38425)


Aliases : AMY2, ATAMY2, Aspi01Gene38425

Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene38425.t1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AT1G69830 AMY3, ATAMY3 alpha-amylase-like 3 0.03 OrthoFinder output from all 47 species
AT1G76130 AMY2, ATAMY2 alpha-amylase-like 2 0.03 OrthoFinder output from all 47 species
Adi_g020886 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g022283 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38642 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g28422 AMY3, ATAMY3 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0104.g044887 AMY1, ATAMY1 alpha amylase & original description: CDS=1-729 0.06 OrthoFinder output from all 47 species
Ceric.12G070100.1 AMY1, ATAMY1,... alpha amylase & original description: pacid=50600969... 0.05 OrthoFinder output from all 47 species
Dac_g11521 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g26015 AMY2, ATAMY2 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g06797 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g15848 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os01g25510.1 AMY1, ATAMY1,... Alpha-amylase isozyme C OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
LOC_Os01g51754.1 AMY3, ATAMY3,... alpha amylase 0.02 OrthoFinder output from all 47 species
Lfl_g28974 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10337735g0010 AMY2, ATAMY2 Probable alpha-amylase 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g10936 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g25602 AMY3, ATAMY3 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g02338 AMY2, ATAMY2 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g20513 AMY3, ATAMY3 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g15368 AMY1, ATAMY1 alpha amylase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0420.g027363 AMY1, ATAMY1 alpha amylase & original description: CDS=1-1383 0.03 OrthoFinder output from all 47 species
Sam_g16056 No alias alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g37719 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009946_P001 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004556 alpha-amylase activity IEA Interproscan
MF GO:0005509 calcium ion binding IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 346 401
IPR006047 Glyco_hydro_13_cat_dom 39 291
No external refs found!