Aspi01Gene17818.t1 (SHP2, AGL5, Aspi01Gene17818)

Aliases : SHP2, AGL5, Aspi01Gene17818

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene17818.t1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00244880	AGL61, DIA,...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	OrthoFinder output from all 47 species
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT3G30260	AGL79	AGAMOUS-like 79	0.03	OrthoFinder output from all 47 species
AT4G11880	AGL14	AGAMOUS-like 14	0.03	OrthoFinder output from all 47 species
AT5G15800	AGL2, SEP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
AT5G60910	AGL8, FUL	AGAMOUS-like 8	0.03	OrthoFinder output from all 47 species
Aev_g17392	AGL71	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g40548	AGL13	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g32548	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene17806.t1	SHP2, AGL5,...	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene19457.t1	AGL16, Aspi01Gene19457	MADS/AGL-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.33G065500.1	AGL13, Ceric.33G065500	MADS/AGL-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
GSVIVT01012110001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01014093001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
LOC_Os01g10504.1	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os02g36924.1	AGL16, LOC_Os02g36924	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os04g38780.1	AGL16, LOC_Os04g38780	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.02	OrthoFinder output from all 47 species
LOC_Os06g22760.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
LOC_Os06g23950.1	LOC_Os06g23950	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os06g23980.1	AGL16, LOC_Os06g23980	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.03	OrthoFinder output from all 47 species
Len_g28933	GL19, AGL19	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g44573	SOC1, AGL20, ATSOC1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g13029	AGL21	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_15122g0010	AGL16	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
MA_1767g0010	AGL66	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
MA_20180g0010	AGL24	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_32676g0010	SOC1, AGL20, ATSOC1	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_57186g0010	AGL15	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_6544g0010	STK, AGL11	Floral homeotic protein AGAMOUS OS=Panax ginseng...	0.03	OrthoFinder output from all 47 species
MA_94049g0010	AGL9, SEP3	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
MA_9544285g0010	AGL42	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Nbi_g11366	AGL3, SEP4	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g09107	AGL16	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g28969	AGL104	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g60433	AGL21	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g62574	SHP2, AGL5	MADS/AGL-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo79393	AGL104	RNA biosynthesis.transcriptional activation.MADS box...	0.02	OrthoFinder output from all 47 species
Solyc04g005320.3.1	AGL2, SEP1,...	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Solyc12g056460.3.1	SOC1, AGL20,...	transcription factor (MADS/AGL)	0.05	OrthoFinder output from all 47 species
Tin_g23921	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015447_P001	AGL6, Zm00001e015447	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e016964_P001	GL19, AGL19,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e031267_P003	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e032766_P001	AGL29, Zm00001e032766	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Zm00001e033144_P001	AGL29, Zm00001e033144	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Zm00001e039774_P001	SHP2, AGL5,...	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	54	101
IPR002487	TF_Kbox	116	172

External Links

No external refs found!

Aspi01Gene17818.t1 (SHP2, AGL5, Aspi01Gene17818)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation