Aspi01Gene17797.t1 (SHP2, AGL5, Aspi01Gene17797)

Aliases : SHP2, AGL5, Aspi01Gene17797

Description : MADS/AGL-type transcription factor & original description: none

Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Aspi01Gene17797.t1
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.03	OrthoFinder output from all 47 species
Aev_g20345	AGL7, AP1	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01025945001	STK, AGL11	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
GSVIVT01026207001	AGL32, TT16, ABS	RNA biosynthesis.transcriptional activation.MADS box...	0.03	OrthoFinder output from all 47 species
LOC_Os07g04170.1	AP3, ATAP3,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
LOC_Os09g02780.1	AGL61, DIA,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species
Len_g23079	AGL91	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g13167	AGL42	MADS/AGL-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_16629g0010	ANR1, AGL44	transcription factor (MADS/AGL)	0.03	OrthoFinder output from all 47 species
Pp3c16_19170V3.1	AGL61, DIA, Pp3c16_19170	AGAMOUS-like 61	0.02	OrthoFinder output from all 47 species
Tin_g34079	AGL104	MADS/AGL-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e015728_P001	AGL16, Zm00001e015728	transcription factor (MADS/AGL)	0.04	OrthoFinder output from all 47 species
Zm00001e030373_P001	AGL10, CAL1,...	transcription factor (MADS/AGL)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	64	111
IPR002100	TF_MADSbox	169	216
IPR002487	TF_Kbox	244	330

External Links

No external refs found!

Aspi01Gene17797.t1 (SHP2, AGL5, Aspi01Gene17797)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation