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  5. Aspi01Gene11880.t1

Aspi01Gene11880.t1 (HIS1-3, Aspi01Gene11880)


Aliases : HIS1-3, Aspi01Gene11880

Description : linker histone *(H1) & original description: none


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Aspi01Gene11880.t1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT2G18050 HIS1-3 histone H1-3 0.03 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g054553 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g116607 No alias linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g08116 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06758.t1 HIS1-3, Aspi01Gene06758 linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene25496.t1 HIS1-3, Aspi01Gene25496 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0099.g044182 No alias linker histone *(H1) & original description: CDS=160-858 0.03 OrthoFinder output from all 47 species
Ceric.13G007600.1 Ceric.13G007600 not classified & original description: pacid=50636367... 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.02 OrthoFinder output from all 47 species
Dcu_g37029 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.02 OrthoFinder output from all 47 species
LOC_Os07g08710.1 LOC_Os07g08710 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Len_g04604 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.04 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.02 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_877599g0010 No alias linker histone (H1) 0.03 OrthoFinder output from all 47 species
Mp6g03150.1 HIS1-3 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g09324 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g20559 No alias linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Zm00001e032965_P005 Zm00001e032965 linker histone (H1) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 43 110
No external refs found!