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  5. Dcu_g51202

Dcu_g51202


Description : small subunit of ribulose-1,5-bisphosphat carboxylase/oxygenase heterodimer & original description: none


Gene families : OG0000735 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000735_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g51202
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00079p00061090 evm_27.TU.AmTr_v1... Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.18 OrthoFinder output from all 47 species
AT1G67090 RBCS1A ribulose bisphosphate carboxylase small chain 1A 0.12 OrthoFinder output from all 47 species
AT5G38410 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.16 OrthoFinder output from all 47 species
AT5G38420 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.08 OrthoFinder output from all 47 species
AT5G38430 No alias Ribulose bisphosphate carboxylase (small chain) family protein 0.03 OrthoFinder output from all 47 species
Aev_g34436 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Ala_g09842 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ala_g19484 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Als_g54404 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Als_g60911 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Aob_g08171 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.07 OrthoFinder output from all 47 species
Aob_g09818 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Aob_g24117 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Aob_g33021 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Aop_g21743 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Cba_g37481 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Cba_g39071 No alias small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Ceric.09G050600.1 RBCS1A, Ceric.09G050600 small subunit of ribulose-1,5-bisphosphat... 0.15 OrthoFinder output from all 47 species
Ceric.09G050800.1 RBCS1A, Ceric.09G050800 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G050900.1 RBCS1A, Ceric.09G050900 small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Ceric.09G051100.1 RBCS1A, Ceric.09G051100 small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Ceric.09G051300.1 RBCS1A, Ceric.09G051300 small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Ceric.09G051400.1 RBCS1A, Ceric.09G051400 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
Ceric.09G051500.1 RBCS1A, Ceric.09G051500 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ceric.09G051600.1 RBCS1A, Ceric.09G051600 small subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
Ceric.09G051700.1 RBCS1A, Ceric.09G051700 small subunit of ribulose-1,5-bisphosphat... 0.11 OrthoFinder output from all 47 species
Ceric.09G051800.1 RBCS1A, Ceric.09G051800 small subunit of ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Cre02.g120150 RBCS1A Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Dcu_g09882 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Dde_g36766 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
Ehy_g14905 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
GSVIVT01008288001 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.12 OrthoFinder output from all 47 species
Gb_00380 No alias small subunit of ribulose-1,5-bisphosphat... 0.14 OrthoFinder output from all 47 species
Gb_00381 No alias small subunit of ribulose-1,5-bisphosphat... 0.17 OrthoFinder output from all 47 species
LOC_Os12g17600.1 RBCS1A, LOC_Os12g17600 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species
LOC_Os12g19381.1 RBCS1A, LOC_Os12g19381 small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Lfl_g17059 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Lfl_g31310 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
MA_47626g0010 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g06050.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Mp4g09890.1 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Mp4g10850.1 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Nbi_g16796 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Pir_g54622 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.1 OrthoFinder output from all 47 species
Pir_g63695 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Pnu_g12024 No alias small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Pp3c13_15786V3.1 Pp3c13_15786 No annotation 0.03 OrthoFinder output from all 47 species
Pp3c19_1840V3.1 RBCS1A, Pp3c19_1840 Ribulose bisphosphate carboxylase (small chain) family protein 0.03 OrthoFinder output from all 47 species
Pp3c3_14510V3.1 RBCS1A, Pp3c3_14510 ribulose bisphosphate carboxylase small chain 1A 0.06 OrthoFinder output from all 47 species
Pp3c3_20140V3.1 RBCS1A, Pp3c3_20140 ribulose bisphosphate carboxylase small chain 1A 0.05 OrthoFinder output from all 47 species
Ppi_g31547 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ppi_g32726 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.04 OrthoFinder output from all 47 species
Ppi_g60704 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0124.g021603 RBCS1A small subunit of ribulose-1,5-bisphosphat... 0.05 OrthoFinder output from all 47 species
Sam_g36381 No alias small subunit of ribulose-1,5-bisphosphat... 0.03 OrthoFinder output from all 47 species
Smo147927 No alias Photosynthesis.calvin cycle.ribulose-1,5-bisphosphat... 0.02 OrthoFinder output from all 47 species
Solyc02g063150.3.1 Solyc02g063150 small subunit of ribulose-1,5-bisphosphat... 0.09 OrthoFinder output from all 47 species
Solyc02g085950.4.1 Solyc02g085950 small subunit of ribulose-1,5-bisphosphat... 0.19 OrthoFinder output from all 47 species
Solyc03g034220.3.1 Solyc03g034220 small subunit of ribulose-1,5-bisphosphat... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008218 bioluminescence IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000894 RuBisCO_ssu_dom 81 117
IPR024680 RuBisCO_ssu_N 16 56
No external refs found!