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  5. Dcu_g50517

Dcu_g50517


Description : not classified & original description: none


Gene families : OG0001618 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001618_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g50517
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT1G63250 No alias DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
AT5G08620 ATRH25, STRS2 DEA(D/H)-box RNA helicase family protein 0.02 OrthoFinder output from all 47 species
Aspi01Gene05458.t1 Aspi01Gene05458 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011827 No alias mRNA helicase *(RH31) & original description: CDS=535-2991 0.03 OrthoFinder output from all 47 species
Cba_g15777 No alias mRNA helicase *(RH31) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019804001 No alias DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
LOC_Os02g57980.1 LOC_Os02g57980 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
LOC_Os06g33520.1 LOC_Os06g33520 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_10432294g0010 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g07730.1 No alias DEAD-box ATP-dependent RNA helicase 26 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Mp7g07740.1 No alias Probable DEAD-box ATP-dependent RNA helicase 48... 0.02 OrthoFinder output from all 47 species
Tin_g12986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016261_P001 Zm00001e016261 DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e037076_P003 Zm00001e037076 DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043484 regulation of RNA splicing IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP HCCA
BP GO:0050684 regulation of mRNA processing IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903311 regulation of mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 189 364
No external refs found!