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  5. Dcu_g48721

Dcu_g48721 (TPR5)


Aliases : TPR5

Description : polymerase-II assembly factor *(RPAP3) & original description: none


Gene families : OG0003637 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003637_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g48721

Target Alias Description ECC score Gene Family Method Actions
AT1G56440 TPR5 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Aop_g05129 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g17073 TPR5 polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Gb_00083 TPR5 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Sam_g15317 No alias polymerase-II assembly factor *(RPAP3) & original... 0.03 OrthoFinder output from all 47 species
Solyc10g045540.2.1 TPR5, Solyc10g045540 RPAP3 polymerase-II assembly factor 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025986 RPAP3-like_C 418 507
No external refs found!