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  5. Dcu_g46607

Dcu_g46607


Description : component *(CWC21) of MAC spliceosome-associated complex & original description: none


Gene families : OG0003203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g46607
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT3G23900 No alias RNA recognition motif (RRM)-containing protein 0.05 OrthoFinder output from all 47 species
Als_g53039 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17747 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Azfi_s0020.g015475 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.07 OrthoFinder output from all 47 species
Ceric.33G033500.1 Ceric.33G033500 component *(CWC21) of MAC spliceosome-associated complex... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020816.107 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g01005 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Ehy_g04929 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
GSVIVT01001478001 No alias No description available 0.04 OrthoFinder output from all 47 species
Len_g32499 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Lfl_g04122 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Mp1g28520.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Msp_g04933 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Pir_g15377 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Pnu_g10132 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Pnu_g13094 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.03 OrthoFinder output from all 47 species
Ppi_g10244 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.02 OrthoFinder output from all 47 species
Sam_g40738 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Solyc09g092250.3.1 Solyc09g092250 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Tin_g01175 No alias component *(CWC21) of MAC spliceosome-associated complex... 0.04 OrthoFinder output from all 47 species
Zm00001e017191_P001 Zm00001e017191 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e025611_P001 Zm00001e025611 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 349 409
IPR017868 Filamin/ABP280_repeat-like 76 173
No external refs found!