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  5. Dcu_g46327

Dcu_g46327


Description : component *(SRm160) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003504 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003504_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g46327

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00256890 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.04 OrthoFinder output from all 47 species
AT2G29210 No alias splicing factor PWI domain-containing protein 0.08 OrthoFinder output from all 47 species
Adi_g019655 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g042058 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Adi_g057078 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Aev_g07320 No alias component *(SRm160) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Als_g54316 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020629.39 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 OrthoFinder output from all 47 species
Cre16.g678050 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 OrthoFinder output from all 47 species
Dac_g07102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g21232 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ehy_g07869 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
GSVIVT01024906001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 OrthoFinder output from all 47 species
Gb_33063 No alias component SRm160 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Len_g59868 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10938 No alias component *(SRm160) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
MA_1065g0010 No alias component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Mp8g09170.1 No alias component SRm160 of RNA quality control Exon Junction complex 0.01 OrthoFinder output from all 47 species
Nbi_g09941 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g42357 No alias component *(SRm160) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026743 No alias component *(SRm160) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Sam_g07002 No alias component *(SRm160) of RNA quality control Exon Junction... 0.07 OrthoFinder output from all 47 species
Solyc09g030390.3.1 Solyc09g030390 component SRm160 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Tin_g23972 No alias component *(SRm160) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Zm00001e001194_P001 Zm00001e001194 component SRm160 of RNA quality control Exon Junction complex 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002483 PWI_dom 46 114
No external refs found!