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  5. Dcu_g46147

Dcu_g46147


Description : component *(ADA3) of SAGA transcription co-activator complex & original description: none


Gene families : OG0002109 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g46147
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AT2G19390 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
Adi_g016461 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g05137 No alias component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Als_g29245 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Als_g49585 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Aob_g10990 No alias component *(ADA3) of SAGA transcription co-activator... 0.02 OrthoFinder output from all 47 species
Aob_g10991 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Azfi_s0021.g015784 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Azfi_s2452.g111479 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ceric.03G067900.1 Ceric.03G067900 component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Ceric.34G015100.1 Ceric.34G015100 component *(ADA3) of SAGA transcription co-activator... 0.08 OrthoFinder output from all 47 species
Dac_g32253 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ehy_g12120 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Ehy_g31344 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
GSVIVT01001003001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01015158001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 OrthoFinder output from all 47 species
GSVIVT01036136001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 OrthoFinder output from all 47 species
Gb_07255 No alias component ADA3 of SAGA transcription co-activator complex 0.02 OrthoFinder output from all 47 species
LOC_Os01g73620.1 LOC_Os01g73620 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
LOC_Os05g01690.1 LOC_Os05g01690 component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
Len_g10698 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Len_g35259 No alias component *(ADA3) of SAGA transcription co-activator... 0.06 OrthoFinder output from all 47 species
Lfl_g10282 No alias component *(ADA3) of SAGA transcription co-activator... 0.07 OrthoFinder output from all 47 species
Lfl_g27993 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
MA_107341g0010 No alias component ADA3 of SAGA transcription co-activator complex 0.07 OrthoFinder output from all 47 species
Mp1g06630.1 No alias component ADA3 of SAGA transcription co-activator complex 0.08 OrthoFinder output from all 47 species
Msp_g14668 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Nbi_g18247 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Ore_g18819 No alias component *(ADA3) of SAGA transcription co-activator... 0.09 OrthoFinder output from all 47 species
Ore_g31628 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13632 No alias component *(ADA3) of SAGA transcription co-activator... 0.05 OrthoFinder output from all 47 species
Pir_g43188 No alias component *(ADA3) of SAGA transcription co-activator... 0.04 OrthoFinder output from all 47 species
Pnu_g13847 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Sam_g48948 No alias component *(ADA3) of SAGA transcription co-activator... 0.1 OrthoFinder output from all 47 species
Smo407119 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 OrthoFinder output from all 47 species
Solyc07g040980.3.1 Solyc07g040980 component ADA3 of SAGA transcription co-activator complex 0.06 OrthoFinder output from all 47 species
Solyc11g006960.2.1 Solyc11g006960 component ADA3 of SAGA transcription co-activator complex 0.05 OrthoFinder output from all 47 species
Spa_g21967 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g26204 No alias component *(ADA3) of SAGA transcription co-activator... 0.03 OrthoFinder output from all 47 species
Zm00001e018678_P002 Zm00001e018678 component ADA3 of SAGA transcription co-activator complex 0.03 OrthoFinder output from all 47 species
Zm00001e027665_P001 Zm00001e027665 component ADA3 of SAGA transcription co-activator complex 0.08 OrthoFinder output from all 47 species
Zm00001e029688_P001 Zm00001e029688 component ADA3 of SAGA transcription co-activator complex 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019340 Histone_AcTrfase_su3 991 1052
No external refs found!