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  5. Dcu_g42208

Dcu_g42208


Description : not classified & original description: none


Gene families : OG0000221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000221_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g42208

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00097800 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
AMTR_s00001p00251380 evm_27.TU.AmTr_v1... Protein BPS1, chloroplastic OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00040p00052950 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
Adi_g024256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g024370 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g075559 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g084369 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g109052 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g33204 BPS1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g22327 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28173 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g50790 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Aob_g01622 BPS1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g11017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36638 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01342.t1 BPS1, Aspi01Gene01342 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene58350.t1 Aspi01Gene58350 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g02551 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.04G039400.1 Ceric.04G039400 not classified & original description: pacid=50630851... 0.04 OrthoFinder output from all 47 species
Ceric.1Z027800.1 Ceric.1Z027800 not classified & original description: pacid=50597254... 0.05 OrthoFinder output from all 47 species
Ceric.22G029500.1 Ceric.22G029500 not classified & original description: pacid=50614434... 0.02 OrthoFinder output from all 47 species
Ceric.22G030000.1 Ceric.22G030000 not classified & original description: pacid=50614551... 0.05 OrthoFinder output from all 47 species
Ceric.22G030100.1 BPS1, Ceric.22G030100 not classified & original description: pacid=50615453... 0.03 OrthoFinder output from all 47 species
Ceric.22G031800.1 Ceric.22G031800 not classified & original description: pacid=50614819... 0.03 OrthoFinder output from all 47 species
Ceric.22G032300.1 Ceric.22G032300 not classified & original description: pacid=50615347... 0.03 OrthoFinder output from all 47 species
Dac_g34503 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_22841 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10430865g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_123240g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_130577g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_16561g0010 No alias Protein BPS1, chloroplastic OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_69211g0010 ROH1 UPF0496 protein 4 OS=Oryza sativa subsp. indica... 0.02 OrthoFinder output from all 47 species
MA_85744g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Msp_g36211 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g31415 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g07297 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g30449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g31153 BPS1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g31783 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10143 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo422297 No alias No description available 0.02 OrthoFinder output from all 47 species
Spa_g38783 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g38799 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g53529 BPS1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e009073_P001 Zm00001e009073 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e024656_P001 Zm00001e024656 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR008511 ROH1-like 22 155
No external refs found!