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  5. Dcu_g40033

Dcu_g40033 (PUB38, ATPUB38)


Aliases : PUB38, ATPUB38

Description : U-Box-group-II E3 ubiquitin ligase & original description: none


Gene families : OG0004266 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004266_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g40033
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00240140 evm_27.TU.AmTr_v1... U-box domain-containing protein 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT3G47820 PUB39 PLANT U-BOX 39 0.05 OrthoFinder output from all 47 species
Ala_g10271 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04662 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g57958 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.02G042800.1 ATPUB45, PUB45,... U-Box-group-II E3 ubiquitin ligase & original... 0.05 OrthoFinder output from all 47 species
Ceric.29G047200.1 PUB39, Ceric.29G047200 U-Box-group-II E3 ubiquitin ligase & original... 0.05 OrthoFinder output from all 47 species
Dac_g08018 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03795 PUB39 U-Box-group-II E3 ubiquitin ligase & original description: none 0.06 OrthoFinder output from all 47 species
Gb_13006 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Gb_16859 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g13080.1 PUB39, LOC_Os06g13080 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species
LOC_Os06g13090.1 PUB39, LOC_Os06g13090 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
LOC_Os09g21740.1 PUB38, ATPUB38,... E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Lfl_g02186 PUB38, ATPUB38 U-Box-group-II E3 ubiquitin ligase & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g25489 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_252170g0010 PUB38, ATPUB38 E3 ubiquitin ligase (PUB) 0.03 OrthoFinder output from all 47 species
Msp_g15300 No alias U-Box-group-II E3 ubiquitin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g11625 PUB12, AtPUB12 U-Box-group-II E3 ubiquitin ligase & original description: none 0.02 OrthoFinder output from all 47 species
Smo90666 PUB39 U-box domain-containing protein 38 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Tin_g22128 No alias U-Box-group-II E3 ubiquiTin ligase & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e009777_P001 PUB39, Zm00001e009777 E3 ubiquitin ligase (PUB) 0.01 OrthoFinder output from all 47 species
Zm00001e036060_P001 PUB39, Zm00001e036060 E3 ubiquitin ligase (PUB) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003613 Ubox_domain 15 82
IPR000225 Armadillo 332 369
No external refs found!