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  5. Dcu_g39360

Dcu_g39360 (emb1138)


Aliases : emb1138

Description : group-II intron splicing RNA helicase *(RH3) & original description: none


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39360

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00168720 emb1138,... RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
AMTR_s00126p00110160 PMH2, ATRH53,... RNA processing.organelle machineries.RNA... 0.06 OrthoFinder output from all 47 species
Adi_g055951 emb1138 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g079817 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Ala_g22353 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Als_g07437 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.11 OrthoFinder output from all 47 species
Aob_g15554 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Aop_g04482 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0166.g054407 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Cba_g11616 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cre17.g727700 emb1138 DEAD-box ATP-dependent RNA helicase 3, chloroplastic... 0.02 OrthoFinder output from all 47 species
Dac_g12671 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Dde_g04423 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Gb_04849 emb1138 RH3 plastidial RNA basal splicing factor 0.04 OrthoFinder output from all 47 species
Len_g12708 emb1138 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Len_g56603 emb1138 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g10151 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.04 OrthoFinder output from all 47 species
Msp_g07724 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Nbi_g06285 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Ore_g29256 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.05 OrthoFinder output from all 47 species
Pir_g19704 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Sam_g09733 No alias group-II intron splicing RNA helicase *(RH3) & original... 0.06 OrthoFinder output from all 47 species
Spa_g06691 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Spa_g17328 emb1138 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g40629 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006243_P001 emb1138, Zm00001e006243 RH3 plastidial RNA basal splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e011716_P001 emb1138, Zm00001e011716 RH3 plastidial RNA basal splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR012562 GUCT 631 731
IPR011545 DEAD/DEAH_box_helicase_dom 228 398
IPR001650 Helicase_C 436 544
No external refs found!