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  5. Dcu_g39227

Dcu_g39227 (EMB2754)


Aliases : EMB2754

Description : HOPS-specific component *(VPS39) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0004665 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004665_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g39227
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT4G36630 EMB2754 Vacuolar sorting protein 39 0.1 OrthoFinder output from all 47 species
Aev_g03386 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Ala_g09104 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Ceric.17G019800.1 EMB2754, Ceric.17G019800 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001408.13 EMB2754 No description available 0.02 OrthoFinder output from all 47 species
Ehy_g32355 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.03 OrthoFinder output from all 47 species
GSVIVT01018960001 EMB2754 Vesicle trafficking.target membrane... 0.04 OrthoFinder output from all 47 species
Gb_04249 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Lfl_g21335 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Mp3g21320.1 EMB2754 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Pir_g11388 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Ppi_g02390 EMB2754 HOPS-specific component *(VPS39) of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
Smo149115 EMB2754 Vesicle trafficking.target membrane... 0.04 OrthoFinder output from all 47 species
Solyc07g056660.4.1 EMB2754, Solyc07g056660 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Zm00001e005474_P001 EMB2754, Zm00001e005474 HOPS-specific component VPS39 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 591 701
IPR001180 CNH_dom 145 360
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 973 1080
IPR000547 Clathrin_H-chain/VPS_repeat 722 853
No external refs found!