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  5. Dcu_g31948

Dcu_g31948


Description : component *(LHCb1/2/3) of LHC-II complex & original description: none


Gene families : OG0004713 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004713_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g31948
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Ala_g04506 No alias component *(LHCb1/2/3) of LHC-II complex & original... 0.21 OrthoFinder output from all 47 species
Als_g09897 LHCB2.2, LHCB2 component *(LHCb1/2/3) of LHC-II complex & original... 0.08 OrthoFinder output from all 47 species
Als_g18552 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g08127 No alias component *(LHCb1/2/3) of LHC-II complex & original... 0.03 OrthoFinder output from all 47 species
Aob_g17788 No alias component *(LHCb1/2/3) of LHC-II complex & original... 0.05 OrthoFinder output from all 47 species
Ehy_g16610 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Ehy_g17462 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25538 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Ehy_g25539 No alias not classified & original description: none 0.14 OrthoFinder output from all 47 species
Gb_23735 No alias component LHCb1/2/3 of LHC-II complex 0.15 OrthoFinder output from all 47 species
Lfl_g15487 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g19137 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g20252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g20500 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10431300g0030 No alias no hits & (original description: none) 0.15 OrthoFinder output from all 47 species
Msp_g37594 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g02620 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04882 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g19900 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e010548_P001 Zm00001e010548 no hits & (original description: none) 0.28 OrthoFinder output from all 47 species
Zm00001e027832_P001 Zm00001e027832 no hits & (original description: none) 0.27 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004590 orotidine-5'-phosphate decarboxylase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006206 pyrimidine nucleobase metabolic process IEP HCCA
BP GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008800 beta-lactamase activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009112 nucleobase metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
BP GO:0016999 antibiotic metabolic process IEP HCCA
BP GO:0017001 antibiotic catabolic process IEP HCCA
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0030653 beta-lactam antibiotic metabolic process IEP HCCA
BP GO:0030655 beta-lactam antibiotic catabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046112 nucleobase biosynthetic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0072338 lactam metabolic process IEP HCCA
BP GO:0072340 lactam catabolic process IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!