Aliases : U1-70K, U1SNRNP
Description : component *(U1-70K) of U1 snRNP complex & original description: none
Gene families : OG0003392 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003392_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Dcu_g24491 | |
Cluster | HCCA: Cluster_184 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00059p00067090 | U1-70K, U1SNRNP,... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
AT3G50670 | U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein-70K | 0.04 | OrthoFinder output from all 47 species | |
Als_g10647 | U1-70K, U1SNRNP | component *(U1-70K) of U1 snRNP complex & original... | 0.06 | OrthoFinder output from all 47 species | |
Cba_g27207 | U1-70K, U1SNRNP | component *(U1-70K) of U1 snRNP complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.01G033200.1 | U1-70K, U1SNRNP,... | component *(U1-70K) of U1 snRNP complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00001333.27 | U1-70K, U1SNRNP | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
Cre16.g656250 | U1-70K, U1SNRNP | RNA processing.RNA splicing.U2-type-intron-specific... | 0.01 | OrthoFinder output from all 47 species | |
GSVIVT01018981001 | U1-70K, U1SNRNP | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
Gb_32834 | U1-70K, U1SNRNP | U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os10g02630.1 | U1-70K, U1SNRNP,... | component U1-70K of U1 small nuclear ribonucleoprotein... | 0.05 | OrthoFinder output from all 47 species | |
MA_104182g0010 | U1-70K, U1SNRNP | component U1-70K of U1 small nuclear ribonucleoprotein... | 0.03 | OrthoFinder output from all 47 species | |
MA_10426294g0010 | U1-70K, U1SNRNP | component U1-70K of U1 small nuclear ribonucleoprotein... | 0.02 | OrthoFinder output from all 47 species | |
Pnu_g11483 | U1-70K, U1SNRNP | component *(U1-70K) of U1 snRNP complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Smo58751 | U1-70K, U1SNRNP | RNA processing.RNA splicing.U2-type-intron-specific... | 0.02 | OrthoFinder output from all 47 species | |
Solyc02g085420.4.1 | U1-70K, U1SNRNP,... | component U1-70K of U1 small nuclear ribonucleoprotein... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g56473 | U1-70K, U1SNRNP | component *(U1-70K) of U1 snRNP complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e012949_P002 | U1-70K, U1SNRNP,... | component U1-70K of U1 small nuclear ribonucleoprotein... | 0.05 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005778 | peroxisomal membrane | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006265 | DNA topological change | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0006996 | organelle organization | IEP | HCCA |
BP | GO:0007031 | peroxisome organization | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
MF | GO:0016853 | isomerase activity | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
CC | GO:0031090 | organelle membrane | IEP | HCCA |
CC | GO:0031903 | microbody membrane | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0035299 | inositol pentakisphosphate 2-kinase activity | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
CC | GO:0042579 | microbody | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
MF | GO:0050660 | flavin adenine dinucleotide binding | IEP | HCCA |
BP | GO:0051276 | chromosome organization | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0071103 | DNA conformation change | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
CC | GO:0098588 | bounding membrane of organelle | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 38 | 107 |
No external refs found! |