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  5. Dcu_g20400

Dcu_g20400


Description : pre-mRNA splicing factor *(RBM25) & original description: none


Gene families : OG0002875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g20400

Target Alias Description ECC score Gene Family Method Actions
Aev_g46746 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.05 OrthoFinder output from all 47 species
Aev_g48145 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07363 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.06 OrthoFinder output from all 47 species
Als_g56861 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g32231 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene12580.t1 Aspi01Gene12580 pre-mRNA splicing factor *(RBM25) & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene46189.t1 Aspi01Gene46189 pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.06G082400.1 Ceric.06G082400 pre-mRNA splicing factor *(RBM25) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001065.13 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g09989 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g31973 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g09390 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g39469 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10297029g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_96952g0010 No alias pre-mRNA splicing factor (RBM25) 0.03 OrthoFinder output from all 47 species
Mp4g16880.1 No alias pre-mRNA splicing factor (RBM25) 0.02 OrthoFinder output from all 47 species
Nbi_g21895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40496 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60660 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09240 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g16365 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.02 OrthoFinder output from all 47 species
Smo440812 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Spa_g40329 No alias pre-mRNA splicing factor *(RBM25) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e022382_P002 Zm00001e022382 pre-mRNA splicing factor (RBM25) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006397 mRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030976 thiamine pyrophosphate binding IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0050997 quaternary ammonium group binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 536 604
IPR002483 PWI_dom 1249 1312
No external refs found!