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Description : component *(RPP3) of large ribosomal-subunit (LSU) proteome & original description: none
Gene families : OG0003859 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003859_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Dcu_g19693 | |
| Cluster | HCCA: Cluster_4 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00025p00182570 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
| AT4G25890 | No alias | 60S acidic ribosomal protein family | 0.08 | OrthoFinder output from all 47 species | |
| AT5G57290 | No alias | 60S acidic ribosomal protein family | 0.07 | OrthoFinder output from all 47 species | |
| Adi_g053256 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g124944 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g10658 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20552 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01010910001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.07 | OrthoFinder output from all 47 species | |
| Gb_31564 | No alias | component RPP3 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g13080.1 | LOC_Os01g13080 | component RPP3 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g48780.1 | LOC_Os06g48780 | component RPP3 of LSU proteome component | 0.02 | OrthoFinder output from all 47 species | |
| Len_g49119 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10431312g0020 | No alias | component RPP3 of LSU proteome component. component... | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g18566 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c21_16160V3.1 | Pp3c21_16160 | 60S acidic ribosomal protein family | 0.02 | OrthoFinder output from all 47 species | |
| Smo105823 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc07g009330.4.1 | Solyc07g009330 | component RPP3 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g00251 | No alias | component *(RPP3) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e013180_P001 | Zm00001e013180 | component RPP3 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003779 | actin binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| CC | GO:0005634 | nucleus | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006260 | DNA replication | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006310 | DNA recombination | IEP | HCCA |
| BP | GO:0006812 | monoatomic cation transport | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | HCCA |
| MF | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups | IEP | HCCA |
| CC | GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034220 | monoatomic ion transmembrane transport | IEP | HCCA |
| CC | GO:0043226 | organelle | IEP | HCCA |
| CC | GO:0043229 | intracellular organelle | IEP | HCCA |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
| MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
| MF | GO:0051537 | 2 iron, 2 sulfur cluster binding | IEP | HCCA |
| MF | GO:0051540 | metal cluster binding | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0098655 | monoatomic cation transmembrane transport | IEP | HCCA |
| BP | GO:0098660 | inorganic ion transmembrane transport | IEP | HCCA |
| BP | GO:0098662 | inorganic cation transmembrane transport | IEP | HCCA |
| BP | GO:1902600 | proton transmembrane transport | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |