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  5. Dcu_g19294

Dcu_g19294


Description : not classified & original description: none


Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g19294

Target Alias Description ECC score Gene Family Method Actions
Adi_g107381 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Ala_g02674 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Als_g14335 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.04 OrthoFinder output from all 47 species
Als_g26663 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g06975 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.06 OrthoFinder output from all 47 species
Aspi01Gene43520.t1 Aspi01Gene43520 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0028.g023845 No alias not classified & original description: CDS=130-1884 0.03 OrthoFinder output from all 47 species
Ceric.29G060800.1 Ceric.29G060800 not classified & original description: pacid=50624742... 0.08 OrthoFinder output from all 47 species
Ceric.29G061100.1 Ceric.29G061100 XRN4-exoribonuclease cofactor *(LARP1) & original... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000498.93 No alias No description available 0.02 OrthoFinder output from all 47 species
Ehy_g07929 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g07940 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.02 OrthoFinder output from all 47 species
Gb_04152 No alias La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_175718g0010 No alias XRN4-exoribonuclease cofactor (LARP1) 0.03 OrthoFinder output from all 47 species
MA_1763g0010 No alias La-related protein 1A OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Ore_g19204 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13014 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13658 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.05 OrthoFinder output from all 47 species
Sam_g26426 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g27548 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Solyc02g061980.3.1 Solyc02g061980 La-related protein 1C OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc04g081820.3.1 Solyc04g081820 La-related protein 1C OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g50019 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g46280 No alias XRN4-exoribonuclease cofactor *(LARP1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e011617_P001 Zm00001e011617 La-related protein 1B OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e025537_P001 Zm00001e025537 XRN4-exoribonuclease cofactor (LARP1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006630 La_HTH 342 396
No external refs found!