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  5. Dcu_g18808

Dcu_g18808


Description : not classified & original description: none


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g18808
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00193590 evm_27.TU.AmTr_v1... No description available 0.08 OrthoFinder output from all 47 species
AT4G24430 No alias Rhamnogalacturonate lyase family protein 0.05 OrthoFinder output from all 47 species
AT4G37950 No alias Rhamnogalacturonate lyase family protein 0.03 OrthoFinder output from all 47 species
Adi_g126576 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08825 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19107 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g21152 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ceric.18G076800.1 Ceric.18G076800 not classified & original description: pacid=50622194... 0.03 OrthoFinder output from all 47 species
GSVIVT01006298001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01009215001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01012710001 No alias No description available 0.03 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Gb_00787 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
LOC_Os08g44040.1 LOC_Os08g44040 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os12g03790.1 LOC_Os12g03790 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Len_g19716 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Lfl_g36473 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
MA_10434775g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp2g13570.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp2g13580.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g03160.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g20220.1 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Mp7g11130.1 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp7g11760.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g08194 No alias not classified & original description: none 0.09 OrthoFinder output from all 47 species
Pir_g11314 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.06 OrthoFinder output from all 47 species
Solyc04g076650.2.1 Solyc04g076650 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc05g051350.2.1 Solyc05g051350 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011270.1.1 Solyc11g011270 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g011280.3.1 Solyc11g011280 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Solyc11g011300.2.1 Solyc11g011300 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g04774 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
Spa_g05669 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013992_P006 Zm00001e013992 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR029411 RG-lyase_III 462 649
IPR010325 Rhamnogal_lyase 25 223
IPR029413 RG-lyase_II 379 445
No external refs found!