Dcu_g18160

Description : subgroup ERF-II transcription factor *(ERF16/17/18) & original description: none

Gene families : OG0000003 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g18160
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00088760	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
AMTR_s00129p00112550	ERF72, EBP,...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	OrthoFinder output from all 47 species
Als_g36600	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene58508.t1	Aspi01Gene58508	subgroup ERF-III transcription factor & original...	0.03	OrthoFinder output from all 47 species
Gb_17501	HRE1	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Gb_34849	ERF-1, ATERF-1	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os02g43940.1	ERF38, ATERF38,...	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os02g51670.1	RAP2.4, LOC_Os02g51670	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os05g49700.1	LOC_Os05g49700	transcription factor (DREB)	0.02	OrthoFinder output from all 47 species
LOC_Os09g39850.1	ERF1, ATERF1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
LOC_Os11g06770.2	ERF110, LOC_Os11g06770	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Ppi_g56213	RAP2.11	transcription factor *(ERN1) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc09g089920.1.1	Solyc09g089920	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Solyc09g089930.3.1	ERF1, ATERF1,...	transcription factor (ERF)	0.02	OrthoFinder output from all 47 species
Solyc12g005960.3.1	ERF7, ATERF7,...	transcription factor (ERF)	0.01	OrthoFinder output from all 47 species
Spa_g52109	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
CC	GO:0005778	peroxisomal membrane	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009522	photosystem I	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
BP	GO:0016559	peroxisome fission	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
CC	GO:0031903	microbody membrane	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0048285	organelle fission	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
CC	GO:0098796	membrane protein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	14	63

External Links

No external refs found!

Dcu_g18160

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation