Dcu_g15145 (PRP39)

Aliases : PRP39

Description : pre-mRNA-processing protein *(PRP39) & original description: none

Gene families : OG0002297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g15145
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00039p00226980	PRP39,...	No description available	0.02	OrthoFinder output from all 47 species
AMTR_s00179p00033790	AT PRP39-2,...	No description available	0.07	OrthoFinder output from all 47 species
Adi_g018948	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g019406	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g059074	AT PRP39-2, PRP39-2	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g21759	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g12647	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.09	OrthoFinder output from all 47 species
Aob_g16599	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g37742	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g009619	PRP39	pre-mRNA-processing protein *(PRP39) & original...	0.03	OrthoFinder output from all 47 species
Cba_g25483	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.04G096600.1	PRP39, Ceric.04G096600	pre-mRNA-processing protein *(PRP39) & original...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020911.47	PRP39	No description available	0.02	OrthoFinder output from all 47 species
Cre16.g670300	PRP39	No description available	0.03	OrthoFinder output from all 47 species
Dac_g40489	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g11777	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.06	OrthoFinder output from all 47 species
Ehy_g09806	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01021383001	AT PRP39-2, PRP39-2	No description available	0.05	OrthoFinder output from all 47 species
GSVIVT01028421001	PRP39	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01028422001	PRP39	No description available	0.03	OrthoFinder output from all 47 species
GSVIVT01028423001	PRP39	No description available	0.03	OrthoFinder output from all 47 species
Gb_23802	PRP39	pre-mRNA-processing protein (PRP39)	0.06	OrthoFinder output from all 47 species
LOC_Os03g11200.1	PRP39, LOC_Os03g11200	pre-mRNA-processing protein (PRP39)	0.03	OrthoFinder output from all 47 species
Len_g23571	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g19659	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.08	OrthoFinder output from all 47 species
Mp6g00560.1	PRP39	pre-mRNA-processing protein (PRP39)	0.03	OrthoFinder output from all 47 species
Msp_g38712	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g42142	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g60863	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.05	OrthoFinder output from all 47 species
Pnu_g06717	AT PRP39-2, PRP39-2	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g21848	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g29159	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005318	PRP39	pre-mRNA-processing protein *(PRP39) & original...	0.04	OrthoFinder output from all 47 species
Sam_g11835	No alias	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g18657	No alias	pre-mRNA-processing protein *(PRP39) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g50656	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo109541	PRP39	Cleavage stimulation factor subunit 77 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Spa_g03914	AT PRP39-2, PRP39-2	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g38613	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.09	OrthoFinder output from all 47 species
Spa_g56288	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.08	OrthoFinder output from all 47 species
Tin_g19871	PRP39	pre-mRNA-processing protein *(PRP39) & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000702_P004	PRP39, Zm00001e000702	pre-mRNA-processing protein (PRP39)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0006606	protein import into nucleus	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034504	protein localization to nucleus	IEP	HCCA
MF	GO:0035299	inositol pentakisphosphate 2-kinase activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0043631	RNA polyadenylation	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051170	import into nucleus	IEP	HCCA
MF	GO:0070566	adenylyltransferase activity	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008847	Suf	171	343

External Links

No external refs found!

Dcu_g15145 (PRP39)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation