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  5. Dcu_g14943

Dcu_g14943


Description : scaffold nucleoporin of nuclear pore complex *(NUP133) & original description: none


Gene families : OG0005400 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005400_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g14943
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00088p00153240 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
AT2G05120 No alias Nucleoporin, Nup133/Nup155-like 0.07 OrthoFinder output from all 47 species
Azfi_s0095.g043587 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Cba_g01337 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Ceric.39G025700.1 Ceric.39G025700 scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Dac_g31164 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.05 OrthoFinder output from all 47 species
GSVIVT01030051001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.04 OrthoFinder output from all 47 species
Gb_30615 No alias NUP133 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
LOC_Os03g12450.1 LOC_Os03g12450 NUP133 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
Lfl_g25138 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Ore_g26746 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Ppi_g02412 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.04 OrthoFinder output from all 47 species
Solyc07g047860.4.1 Solyc07g047860 NUP133 scaffold nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Spa_g54138 No alias scaffold nucleoporin of nuclear pore complex *(NUP133) &... 0.03 OrthoFinder output from all 47 species
Zm00001e038670_P001 Zm00001e038670 NUP133 scaffold nucleoporin of nuclear pore complex 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR014908 Nucleoporin_Nup133/Nup155_N 91 530
IPR007187 Nucleoporin_Nup133/Nup155_C 1001 1134
No external refs found!