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Description : cohesin cofactor *(PDS5) & original description: none
Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Dcu_g14818 | |
| Cluster | HCCA: Cluster_57 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00017p00192140 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00061p00213120 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00065p00174980 | evm_27.TU.AmTr_v1... | Cell cycle.mitosis and meiosis.sister chromatid... | 0.06 | OrthoFinder output from all 47 species | |
| AT1G15940 | No alias | Tudor/PWWP/MBT superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT1G77600 | No alias | ARM repeat superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT4G31880 | No alias | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... | 0.06 | OrthoFinder output from all 47 species | |
| AT5G47690 | No alias | binding | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g019469 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g022401 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g117140 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g06182 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g06778 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aev_g18795 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g32765 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g11522 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g20243 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Ala_g24101 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g03900 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g62298 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g07435 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.08 | OrthoFinder output from all 47 species | |
| Aop_g08128 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g69987 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene00716.t1 | Aspi01Gene00716 | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0013.g013139 | No alias | cohesin cofactor *(PDS5) & original description: CDS=60-4409 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0076.g037833 | No alias | cohesin cofactor *(PDS5) & original description: CDS=1-5502 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g04527 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Cba_g18100 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Ceric.11G037000.1 | Ceric.11G037000 | cohesin cofactor *(PDS5) & original description:... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.34G009800.1 | Ceric.34G009800 | cohesin cofactor *(PDS5) & original description:... | 0.09 | OrthoFinder output from all 47 species | |
| Ceric.37G021700.1 | Ceric.37G021700 | cohesin cofactor *(PDS5) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g29223 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g09843 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dde_g10056 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g22023 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ehy_g02974 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g14145 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g25801 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01002731001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01002824001 | No alias | No description available | 0.07 | OrthoFinder output from all 47 species | |
| GSVIVT01008876001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.05 | OrthoFinder output from all 47 species | |
| GSVIVT01023587001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01035890001 | No alias | Cell cycle.mitosis and meiosis.sister chromatid... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_02487 | No alias | cohesin cofactor (PDS5) | 0.05 | OrthoFinder output from all 47 species | |
| Gb_06732 | No alias | cohesin cofactor (PDS5) | 0.02 | OrthoFinder output from all 47 species | |
| Gb_09525 | No alias | cohesin cofactor (PDS5) | 0.04 | OrthoFinder output from all 47 species | |
| Gb_23673 | No alias | cohesin cofactor (PDS5) | 0.07 | OrthoFinder output from all 47 species | |
| LOC_Os02g39920.1 | LOC_Os02g39920 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g17840.1 | LOC_Os06g17840 | cohesin cofactor (PDS5) | 0.04 | OrthoFinder output from all 47 species | |
| Len_g21353 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Len_g21968 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Len_g46602 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Lfl_g09667 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Lfl_g10229 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10426926g0010 | No alias | cohesin cofactor (PDS5) | 0.04 | OrthoFinder output from all 47 species | |
| MA_10433886g0010 | No alias | cohesin cofactor (PDS5) | 0.05 | OrthoFinder output from all 47 species | |
| MA_214607g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
| MA_523g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| MA_815998g0010 | No alias | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
| Mp3g13850.1 | No alias | cohesin cofactor (PDS5) | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g28747 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g02532 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g04827 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g18717 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g22700 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g40089 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g44286 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g14289 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
| Pir_g16328 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Pnu_g17323 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g26080 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g57308 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g59813 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0007.g003457 | No alias | cohesin cofactor *(PDS5) & original description: CDS=365-5053 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g18018 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g18046 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sam_g24524 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g35729 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g36827 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Solyc06g065710.3.1 | Solyc06g065710 | cohesin cofactor (PDS5) | 0.08 | OrthoFinder output from all 47 species | |
| Solyc11g012770.2.1 | Solyc11g012770 | cohesin cofactor (PDS5) | 0.09 | OrthoFinder output from all 47 species | |
| Spa_g09270 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g09451 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g18111 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Tin_g02194 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g20983 | No alias | cohesin cofactor *(PDS5) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e007658_P001 | Zm00001e007658 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e015094_P002 | Zm00001e015094 | cohesin cofactor (PDS5) | 0.11 | OrthoFinder output from all 47 species | |
| Zm00001e019144_P001 | Zm00001e019144 | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e022962_P003 | Zm00001e022962 | cohesin cofactor (PDS5) | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e030989_P001 | Zm00001e030989 | cohesin cofactor (PDS5) | 0.09 | OrthoFinder output from all 47 species | |
| Zm00001e036853_P003 | Zm00001e036853 | cohesin cofactor (PDS5) | 0.07 | OrthoFinder output from all 47 species | |
| Zm00001e041168_P001 | Zm00001e041168 | cohesin cofactor (PDS5) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| CC | GO:0005643 | nuclear pore | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| BP | GO:0006606 | protein import into nucleus | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | HCCA |
| BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
| BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0033365 | protein localization to organelle | IEP | HCCA |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
| BP | GO:0034504 | protein localization to nucleus | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046907 | intracellular transport | IEP | HCCA |
| BP | GO:0051169 | nuclear transport | IEP | HCCA |
| BP | GO:0051170 | import into nucleus | IEP | HCCA |
| BP | GO:0051641 | cellular localization | IEP | HCCA |
| BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |