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  5. Dcu_g14796

Dcu_g14796 (ATCAF1, CAF1)


Aliases : ATCAF1, CAF1

Description : component *(CAF) of CRS2-CAF plastidial RNA splicing factor complexes & original description: none


Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g14796
Cluster HCCA: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00043140 ATCAF1, CAF1,... RNA processing.organelle machineries.RNA... 0.05 OrthoFinder output from all 47 species
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.07 OrthoFinder output from all 47 species
Adi_g015701 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g015702 ATCAF1, CAF1 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Ala_g02604 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Ala_g19873 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.07 OrthoFinder output from all 47 species
Ala_g34328 ATCAF1, CAF1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g30903 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Aob_g07417 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.05 OrthoFinder output from all 47 species
Aob_g14385 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.05 OrthoFinder output from all 47 species
Aop_g13815 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Cba_g06914 CAF2, ATCAF2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.11G050500.1 CAF2, ATCAF2,... component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.06 OrthoFinder output from all 47 species
Ceric.13G021700.1 ATCAF1, CAF1,... component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Ceric.17G046000.1 ATCAF1, CAF1,... not classified & original description: pacid=50617225... 0.03 OrthoFinder output from all 47 species
GSVIVT01013781001 CAF2, ATCAF2 CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01015331001 ATCAF1, CAF1 RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
LOC_Os01g21990.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.02 OrthoFinder output from all 47 species
Lfl_g16965 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.07 OrthoFinder output from all 47 species
MA_14069g0010 No alias CRS2-associated factor 1, mitochondrial OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_757065g0010 CAF2, ATCAF2 CRS2-associated factor 2, chloroplastic OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Msp_g14666 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.03 OrthoFinder output from all 47 species
Nbi_g08909 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.05 OrthoFinder output from all 47 species
Ore_g08767 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Ppi_g03045 ATCAF1, CAF1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g26827 No alias component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Solyc05g018240.4.1 ATCAF1, CAF1,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.07 OrthoFinder output from all 47 species
Solyc11g066300.3.1 CAF2, ATCAF2,... component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 OrthoFinder output from all 47 species
Spa_g06701 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species
Spa_g51985 CAF2, ATCAF2 component *(CAF) of CRS2-CAF plastidial RNA splicing... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006072 glycerol-3-phosphate metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046168 glycerol-3-phosphate catabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0052646 alditol phosphate metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 693 776
IPR001890 RNA-binding_CRM 811 894
No external refs found!