Dcu_g13977

Description : component *(uS3) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001769 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001769_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g13977
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00219330	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT5G35530	No alias	Ribosomal protein S3 family protein	0.03	OrthoFinder output from all 47 species
Adi_g083363	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ala_g20217	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Aop_g10053	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g10054	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.12G046300.1	Ceric.12G046300	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021462.41	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Cre02.g102250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
GSVIVT01015110001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01016775001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
LOC_Os07g41750.1	LOC_Os07g41750	component RPS3 of SSU proteome	0.02	OrthoFinder output from all 47 species
Pir_g11610	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Pp3c11_22640V3.1	Pp3c11_22640	Ribosomal protein S3 family protein	0.01	OrthoFinder output from all 47 species
Pp3c15_21360V3.1	Pp3c15_21360	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c16_3760V3.1	Pp3c16_3760	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Pp3c5_5330V3.1	Pp3c5_5330	Ribosomal protein S3 family protein	0.02	OrthoFinder output from all 47 species
Sam_g27040	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g27041	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Spa_g30478	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Tin_g04923	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g04971	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g05376	No alias	component *(uS3) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Zm00001e021687_P001	Zm00001e021687	component RPS3 of SSU proteome	0.06	OrthoFinder output from all 47 species
Zm00001e035528_P001	Zm00001e035528	component RPS3 of SSU proteome	0.05	OrthoFinder output from all 47 species
Zm00001e040177_P002	Zm00001e040177	component RPS3 of SSU proteome	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	20	93
IPR001351	Ribosomal_S3_C	106	188

External Links

No external refs found!

Dcu_g13977

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation