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  5. Dcu_g13598

Dcu_g13598


Description : component *(eS21) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0004049 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004049_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g13598
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00045p00200410 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT3G53890 No alias Ribosomal protein S21e 0.03 OrthoFinder output from all 47 species
AT5G27700 No alias Ribosomal protein S21e 0.04 OrthoFinder output from all 47 species
Azfi_s0185.g056623 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s2932.g113764 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.28G050200.1 Ceric.28G050200 component *(eS21) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.14 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Cre03.g203450 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01017756001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
GSVIVT01031151001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.1 OrthoFinder output from all 47 species
Gb_27652 No alias component RPS21 of SSU proteome 0.05 OrthoFinder output from all 47 species
Gb_35516 No alias component RPS21 of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os03g46490.1 LOC_Os03g46490 component RPS21 of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp4g22150.1 No alias component RPS21 of SSU proteome 0.07 OrthoFinder output from all 47 species
Sam_g07802 No alias component *(eS21) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Smo271040 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Solyc01g066840.3.1 Solyc01g066840 component RPS21 of SSU proteome 0.04 OrthoFinder output from all 47 species
Solyc04g074910.3.1 Solyc04g074910 component RPS21 of SSU proteome 0.06 OrthoFinder output from all 47 species
Zm00001e001637_P002 Zm00001e001637 component RPS21 of SSU proteome 0.07 OrthoFinder output from all 47 species
Zm00001e011684_P002 Zm00001e011684 component RPS21 of SSU proteome 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0008535 respiratory chain complex IV assembly IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP HCCA
BP GO:0033617 mitochondrial cytochrome c oxidase assembly IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 71 146
No external refs found!