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  5. Dcu_g13373

Dcu_g13373


Description : exoribonuclease *(RRP6L) & original description: none


Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g13373

Target Alias Description ECC score Gene Family Method Actions
Als_g01185 No alias exoribonuclease *(RRP6L) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.19G014700.1 Ceric.19G014700 exoribonuclease *(RRP6L) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g07048 No alias exoribonuclease *(RRP6L) & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os10g30100.1 LOC_Os10g30100 exoribonuclease (RRP6L) 0.03 OrthoFinder output from all 47 species
MA_10434071g0020 No alias Protein RRP6-like 2 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Sam_g16356 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29907 No alias exoribonuclease *(RRP6L) & original description: none 0.02 OrthoFinder output from all 47 species
Smo84661 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0008408 3'-5' exonuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008658 penicillin binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0033218 amide binding IEP HCCA
MF GO:0033293 monocarboxylic acid binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002121 HRDC_dom 351 396
IPR002562 3'-5'_exonuclease_dom 101 268
No external refs found!