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  5. Dcu_g12676

Dcu_g12676


Description : CORVET-specific component *(VPS3) of HOPS/CORVET membrane tethering complexes & original description: none


Gene families : OG0006416 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006416_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g12676

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00129430 evm_27.TU.AmTr_v1... Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
AT1G22860 No alias Vacuolar sorting protein 39 0.02 OrthoFinder output from all 47 species
Aev_g44598 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.03 OrthoFinder output from all 47 species
Ala_g21133 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.07 OrthoFinder output from all 47 species
Ceric.1Z286500.1 Ceric.1Z286500 not classified & original description: pacid=50637237... 0.05 OrthoFinder output from all 47 species
Ceric.24G003400.1 Ceric.24G003400 CORVET-specific component *(VPS3) of HOPS/CORVET... 0.05 OrthoFinder output from all 47 species
Cre17.g709400 No alias Vesicle trafficking.target membrane... 0.03 OrthoFinder output from all 47 species
GSVIVT01013627001 No alias Vesicle trafficking.target membrane... 0.05 OrthoFinder output from all 47 species
Gb_27372 No alias CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.02 OrthoFinder output from all 47 species
LOC_Os05g01360.1 LOC_Os05g01360 CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Lfl_g10679 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.11 OrthoFinder output from all 47 species
MA_1271g0010 No alias CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species
Mp1g01080.1 No alias CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.05 OrthoFinder output from all 47 species
Msp_g14567 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.04 OrthoFinder output from all 47 species
Pnu_g12200 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Ppi_g08950 No alias CORVET-specific component *(VPS3) of HOPS/CORVET... 0.02 OrthoFinder output from all 47 species
Solyc05g015210.4.1 Solyc05g015210 CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.07 OrthoFinder output from all 47 species
Zm00001e029702_P001 Zm00001e029702 CORVET-specific component VPS3 of HOPS/CORVET membrane... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006906 vesicle fusion IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016050 vesicle organization IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0048280 vesicle fusion with Golgi apparatus IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0061025 membrane fusion IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
CC GO:0071203 WASH complex IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090174 organelle membrane fusion IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR019453 VPS39/TGF_beta_rcpt-assoc_2 1017 1124
IPR019452 VPS39/TGF_beta_rcpt-assoc_1 644 712
IPR001180 CNH_dom 266 435
No external refs found!