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  5. Dcu_g12142

Dcu_g12142


Description : not classified & original description: none


Gene families : OG0002837 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002837_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g12142

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00140p00029580 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.PHD finger... 0.08 OrthoFinder output from all 47 species
AT2G36720 No alias Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc... 0.08 OrthoFinder output from all 47 species
Aev_g48839 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene66261.t1 Aspi01Gene66261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene66264.t1 Aspi01Gene66264 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.36G048800.1 Ceric.36G048800 not classified & original description: pacid=50568689... 0.08 OrthoFinder output from all 47 species
Cre01.g018200 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
Dde_g24869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031451001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
GSVIVT01033711001 No alias RNA biosynthesis.transcriptional activation.PHD finger... 0.04 OrthoFinder output from all 47 species
Len_g08907 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g03502 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Mp2g04330.1 No alias PHD finger transcription factor 0.07 OrthoFinder output from all 47 species
Sam_g36826 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo437662 No alias No description available 0.02 OrthoFinder output from all 47 species
Solyc10g083800.2.1 Solyc10g083800 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc10g084650.3.1 Solyc10g084650 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Solyc11g066480.2.1 Solyc11g066480 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species
Zm00001e013368_P001 Zm00001e013368 PHD finger transcription factor 0.03 OrthoFinder output from all 47 species
Zm00001e029784_P001 Zm00001e029784 PHD finger transcription factor 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004402 histone acetyltransferase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006473 protein acetylation IEP HCCA
BP GO:0006475 internal protein amino acid acetylation IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016573 histone acetylation IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0018393 internal peptidyl-lysine acetylation IEP HCCA
BP GO:0018394 peptidyl-lysine acetylation IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0030527 structural constituent of chromatin IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0034212 peptide N-acetyltransferase activity IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043543 protein acylation IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0071203 WASH complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 889 937
IPR032308 TDBD 693 746
IPR019787 Znf_PHD-finger 960 1003
No external refs found!