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  5. Dcu_g12057

Dcu_g12057


Description : not classified & original description: none


Gene families : OG0002016 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002016_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g12057

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00254940 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00031p00165100 evm_27.TU.AmTr_v1... Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT3G52660 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 OrthoFinder output from all 47 species
Adi_g109709 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06301 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g01745 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00675 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g07964 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Azfi_s0390.g067701 No alias not classified & original description: CDS=204-1688 0.04 OrthoFinder output from all 47 species
Ceric.38G037000.1 Ceric.38G037000 not classified & original description: pacid=50579751... 0.04 OrthoFinder output from all 47 species
Dde_g07165 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01036119001 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os12g04180.2 LOC_Os12g04180 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_10435174g0010 No alias Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Ore_g08658 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g28051 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g57087 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g16813 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g28280 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc10g009220.3.1 Solyc10g009220 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e009199_P001 Zm00001e009199 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e021852_P001 Zm00001e021852 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Zm00001e039207_P005 Zm00001e039207 Heterogeneous nuclear ribonucleoprotein Q OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 218 277
IPR000504 RRM_dom 313 382
IPR000504 RRM_dom 138 208
No external refs found!