Dcu_g11724 (CBF5, AtCBF5, NAP57, AtNAP57)

Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex & original description: none

Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Dcu_g11724
Cluster	HCCA: Cluster_57

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00016p00253700	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
Als_g01903	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Aob_g39486	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.06	OrthoFinder output from all 47 species
Azfi_s0132.g049274	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Ceric.36G038600.1	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000553.10	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
Cre03.g172950	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
Dac_g22680	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Dde_g48852	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
GSVIVT01034188001	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	OrthoFinder output from all 47 species
Lfl_g10584	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.06	OrthoFinder output from all 47 species
MA_27456g0030	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.05	OrthoFinder output from all 47 species
Mp4g12650.1	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.03	OrthoFinder output from all 47 species
Pir_g14531	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Solyc02g081810.4.1	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.04	OrthoFinder output from all 47 species
Spa_g05917	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Tin_g32083	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Zm00001e017259_P001	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002478	PUA	303	375
IPR012960	Dyskerin-like	55	112
IPR032819	TruB_C	233	299
IPR002501	PsdUridine_synth_N	116	232

External Links

No external refs found!

Dcu_g11724 (CBF5, AtCBF5, NAP57, AtNAP57)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation