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  5. Dcu_g11179

Dcu_g11179


Description : component *(SKI3) of SUPERKILLER regulation complex & original description: none


Gene families : OG0004899 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004899_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11179

Target Alias Description ECC score Gene Family Method Actions
AT1G76630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Ala_g27528 No alias component *(SKI3) of SUPERKILLER regulation complex &... 0.05 OrthoFinder output from all 47 species
Ceric.1Z063400.1 Ceric.1Z063400 component *(SKI3) of SUPERKILLER regulation complex &... 0.03 OrthoFinder output from all 47 species
Len_g19173 No alias component *(SKI3) of SUPERKILLER regulation complex &... 0.03 OrthoFinder output from all 47 species
Lfl_g09869 No alias component *(SKI3) of SUPERKILLER regulation complex &... 0.04 OrthoFinder output from all 47 species
MA_8519142g0010 No alias Tetratricopeptide repeat protein SKI3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp1g26080.1 No alias component SKI3 of SUPERKILLER (SKI) regulation complex 0.03 OrthoFinder output from all 47 species
Ppi_g09512 No alias component *(SKI3) of SUPERKILLER regulation complex &... 0.03 OrthoFinder output from all 47 species
Smo115934 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 OrthoFinder output from all 47 species
Spa_g12824 No alias component *(SKI3) of SUPERKILLER regulation complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e002277_P001 Zm00001e002277 component SKI3 of SUPERKILLER (SKI) regulation complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR019734 TPR_repeat 944 968
No external refs found!