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  5. Dcu_g11040

Dcu_g11040 (VAN3, SFC, AGD3)


Aliases : VAN3, SFC, AGD3

Description : class I ARF-GAP ARF-GTPase-activating protein & original description: none


Gene families : OG0002309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g11040
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00165790 VAN3, SFC, AGD3,... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.03 OrthoFinder output from all 47 species
AMTR_s00029p00121120 AGD2,... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
AT1G10870 AGD4 ARF-GAP domain 4 0.05 OrthoFinder output from all 47 species
Adi_g058541 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Aev_g02576 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.08 OrthoFinder output from all 47 species
Ala_g02481 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.05 OrthoFinder output from all 47 species
Ala_g19622 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.05 OrthoFinder output from all 47 species
Als_g03857 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.13 OrthoFinder output from all 47 species
Als_g15619 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.06 OrthoFinder output from all 47 species
Aob_g03552 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene70534.t1 VAN3, SFC, AGD3,... class I ARF-GAP ARF-GTPase-activating protein & original... 0.06 OrthoFinder output from all 47 species
Ceric.06G018700.1 VAN3, SFC, AGD3,... class I ARF-GAP ARF-GTPase-activating protein & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01010214001 AGD4 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Gb_03581 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein 0.05 OrthoFinder output from all 47 species
LOC_Os02g42134.2 AGD2, LOC_Os02g42134 class I ARF-GAP ARF-GTPase-activating protein 0.02 OrthoFinder output from all 47 species
LOC_Os09g33600.1 VAN3, SFC, AGD3,... class I ARF-GAP ARF-GTPase-activating protein 0.02 OrthoFinder output from all 47 species
Lfl_g11485 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.07 OrthoFinder output from all 47 species
Nbi_g05883 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.06 OrthoFinder output from all 47 species
Ore_g09767 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.03 OrthoFinder output from all 47 species
Pir_g01993 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.05 OrthoFinder output from all 47 species
Ppi_g02354 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000009 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Smo232336 VAN3, SFC, AGD3 Vesicle trafficking.Coat protein I (COPI) coatomer... 0.05 OrthoFinder output from all 47 species
Solyc04g008660.4.1 AGD2, Solyc04g008660 class I ARF-GAP ARF-GTPase-activating protein 0.09 OrthoFinder output from all 47 species
Solyc05g023750.3.1 VAN3, SFC, AGD3,... class I ARF-GAP ARF-GTPase-activating protein 0.04 OrthoFinder output from all 47 species
Spa_g56823 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activating protein & original... 0.04 OrthoFinder output from all 47 species
Tin_g16540 VAN3, SFC, AGD3 class I ARF-GAP ARF-GTPase-activaTing protein & original... 0.05 OrthoFinder output from all 47 species
Zm00001e023047_P001 AGD2, Zm00001e023047 ADP-ribosylation factor GTPase-activating protein AGD2... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 765 838
IPR001164 ArfGAP_dom 509 646
IPR001849 PH_domain 294 428
No external refs found!