1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g10004

Dcu_g10004


Description : component *(PRPF3) of U4/U6.U5 tri-snRNP complex & original description: none


Gene families : OG0005854 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005854_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g10004

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00169230 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
AT1G28060 No alias Pre-mRNA-splicing factor 3 0.05 OrthoFinder output from all 47 species
Aev_g05519 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
Ala_g07036 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
Als_g18057 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.06 OrthoFinder output from all 47 species
Ceric.33G040100.1 Ceric.33G040100 component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020816.63 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder output from all 47 species
Dac_g21181 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01032624001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
Gb_36855 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species
MA_10432248g0010 No alias protein factor PRPF3 of U4/U6 small nuclear... 0.07 OrthoFinder output from all 47 species
Ore_g10445 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.04 OrthoFinder output from all 47 species
Pnu_g06703 No alias component *(PRPF3) of U4/U6.U5 tri-snRNP complex &... 0.03 OrthoFinder output from all 47 species
Smo169617 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
Solyc06g036580.4.1 Solyc06g036580 protein factor PRPF3 of U4/U6 small nuclear... 0.02 OrthoFinder output from all 47 species
Zm00001e014268_P001 Zm00001e014268 protein factor PRPF3 of U4/U6 small nuclear... 0.06 OrthoFinder output from all 47 species
Zm00001e024816_P001 Zm00001e024816 protein factor PRPF3 of U4/U6 small nuclear... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006476 protein deacetylation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016575 histone deacetylation IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0035601 protein deacylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0098732 macromolecule deacylation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR013881 Pre-mRNA_splic_Prp3 480 706
IPR010541 Prp3_C 731 854
No external refs found!