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  5. Dcu_g09918

Dcu_g09918


Description : not classified & original description: none


Gene families : OG0006545 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006545_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g09918

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268520 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g23020... 0.03 OrthoFinder output from all 47 species
AMTR_s00003p00261700 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g73710... 0.05 OrthoFinder output from all 47 species
AT3G23020 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.17 OrthoFinder output from all 47 species
Adi_g014933 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g06354 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g14753 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g05556 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aspi01Gene35343.t1 Aspi01Gene35343 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aspi01Gene35344.t1 Aspi01Gene35344 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g15281 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ceric.27G000500.1 Ceric.27G000500 not classified & original description: pacid=50606226... 0.17 OrthoFinder output from all 47 species
Dac_g22039 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g16430 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ehy_g02921 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01018090001 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.04 OrthoFinder output from all 47 species
Gb_07316 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.04 OrthoFinder output from all 47 species
Gb_11434 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.02 OrthoFinder output from all 47 species
LOC_Os03g06710.1 LOC_Os03g06710 Pentatricopeptide repeat-containing protein At3g23020... 0.07 OrthoFinder output from all 47 species
LOC_Os07g28900.1 LOC_Os07g28900 Pentatricopeptide repeat-containing protein At1g73710... 0.06 OrthoFinder output from all 47 species
Len_g12772 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g30252 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_10426616g0010 No alias Pentatricopeptide repeat-containing protein At1g73710... 0.03 OrthoFinder output from all 47 species
Msp_g13366 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g20482 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15290 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004055 No alias not classified & original description: CDS=1-1875 0.04 OrthoFinder output from all 47 species
Sam_g07959 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo77736 No alias Pentatricopeptide repeat-containing protein At3g23020... 0.11 OrthoFinder output from all 47 species
Solyc07g054480.3.1 Solyc07g054480 Pentatricopeptide repeat-containing protein At1g73710... 0.06 OrthoFinder output from all 47 species
Solyc09g083110.3.1 Solyc09g083110 Pentatricopeptide repeat-containing protein At3g23020... 0.04 OrthoFinder output from all 47 species
Tin_g09786 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP HCCA
CC GO:0031248 protein acetyltransferase complex IEP HCCA
CC GO:0070461 SAGA-type complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1902493 acetyltransferase complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR033443 PPR_long 475 581
IPR002885 Pentatricopeptide_repeat 430 449
IPR002885 Pentatricopeptide_repeat 603 628
IPR002885 Pentatricopeptide_repeat 638 667
IPR002885 Pentatricopeptide_repeat 671 701
IPR002885 Pentatricopeptide_repeat 252 297
IPR002885 Pentatricopeptide_repeat 809 852
IPR002885 Pentatricopeptide_repeat 127 174
IPR002885 Pentatricopeptide_repeat 704 744
IPR002885 Pentatricopeptide_repeat 320 364
No external refs found!