Aliases : NUP96, PRE, SAR3, MOS3
Description : nucleoporin of nuclear pore complex *(NUP98) & original description: none
Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G80680 | NUP96, PRE, SAR3, MOS3 | SUPPRESSOR OF AUXIN RESISTANCE 3 | 0.05 | OrthoFinder output from all 47 species | |
Aev_g02563 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g06973 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.06 | OrthoFinder output from all 47 species | |
Ala_g12918 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g02615 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g18260 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g08739 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Aop_g62728 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cba_g09959 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.23G078300.1 | Ceric.23G078300 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.29G008200.1 | NUP96, PRE,... | scaffold nucleoporin of nuclear pore complex & original... | 0.05 | OrthoFinder output from all 47 species | |
Cre02.g086887 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Dde_g26450 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ehy_g15785 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01019716001 | No alias | Protein translocation.nucleus.nucleocytoplasmic... | 0.03 | OrthoFinder output from all 47 species | |
Gb_07065 | No alias | NUP98 nucleoporin of nuclear pore complex | 0.06 | OrthoFinder output from all 47 species | |
Gb_29033 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os03g07580.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.05 | OrthoFinder output from all 47 species | |
Len_g13759 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g06213 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.03 | OrthoFinder output from all 47 species | |
MA_10427433g0010 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
MA_10434126g0020 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex | 0.05 | OrthoFinder output from all 47 species | |
MA_548894g0010 | No alias | Nuclear pore complex protein NUP98A OS=Arabidopsis... | 0.02 | OrthoFinder output from all 47 species | |
Mp2g01050.1 | NUP96, PRE, SAR3, MOS3 | NUP96 scaffold nucleoporin of nuclear pore complex.... | 0.04 | OrthoFinder output from all 47 species | |
Msp_g06362 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g01454 | NUP96, PRE, SAR3, MOS3 | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.02 | OrthoFinder output from all 47 species | |
Ore_g22018 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.05 | OrthoFinder output from all 47 species | |
Ore_g26256 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g03244 | No alias | nucleoporin of nuclear pore complex *(NUP98) & original... | 0.06 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0092.g018938 | NUP96, PRE, SAR3, MOS3 | scaffold nucleoporin of nuclear pore complex & original... | 0.02 | OrthoFinder output from all 47 species | |
Smo139717 | NUP96, PRE, SAR3, MOS3 | Protein translocation.nucleus.nucleocytoplasmic... | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g117120.4.1 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.06 | OrthoFinder output from all 47 species | |
Solyc04g007280.3.1 | Solyc04g007280 | NUP98 nucleoporin of nuclear pore complex | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e038897_P001 | NUP96, PRE,... | NUP96 scaffold nucleoporin of nuclear pore complex | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005643 | nuclear pore | IEA | Interproscan |
BP | GO:0006913 | nucleocytoplasmic transport | IEA | Interproscan |
MF | GO:0017056 | structural constituent of nuclear pore | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | HCCA |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | HCCA |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | HCCA |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
MF | GO:0005524 | ATP binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006298 | mismatch repair | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
BP | GO:0006528 | asparagine metabolic process | IEP | HCCA |
BP | GO:0006529 | asparagine biosynthetic process | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
BP | GO:0008380 | RNA splicing | IEP | HCCA |
BP | GO:0008652 | amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | HCCA |
BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | HCCA |
BP | GO:0009890 | negative regulation of biosynthetic process | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0010558 | negative regulation of macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0016053 | organic acid biosynthetic process | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
MF | GO:0016874 | ligase activity | IEP | HCCA |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | HCCA |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | HCCA |
MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
BP | GO:0031324 | negative regulation of cellular metabolic process | IEP | HCCA |
BP | GO:0031327 | negative regulation of cellular biosynthetic process | IEP | HCCA |
MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
MF | GO:0036094 | small molecule binding | IEP | HCCA |
MF | GO:0043168 | anion binding | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0045892 | negative regulation of DNA-templated transcription | IEP | HCCA |
BP | GO:0045934 | negative regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0046394 | carboxylic acid biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048523 | negative regulation of cellular process | IEP | HCCA |
MF | GO:0050661 | NADP binding | IEP | HCCA |
BP | GO:0051172 | negative regulation of nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0051253 | negative regulation of RNA metabolic process | IEP | HCCA |
MF | GO:0051536 | iron-sulfur cluster binding | IEP | HCCA |
MF | GO:0051540 | metal cluster binding | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | HCCA |
BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | HCCA |
BP | GO:1902679 | negative regulation of RNA biosynthetic process | IEP | HCCA |
BP | GO:1903507 | negative regulation of nucleic acid-templated transcription | IEP | HCCA |
No external refs found! |