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  5. Dcu_g08139

Dcu_g08139


Description : nucleoporin of nuclear pore complex *(NUP50) & original description: none


Gene families : OG0003460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g08139
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00196190 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
Aop_g05959 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Ceric.05G088800.1 Ceric.05G088800 nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g03082 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
MA_167441g0010 No alias NUP50 nucleoporin of nuclear pore complex 0.04 OrthoFinder output from all 47 species
Solyc06g066740.3.1 Solyc06g066740 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Tin_g10134 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e028119_P001 Zm00001e028119 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0046907 intracellular transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 14 75
IPR000156 Ran_bind_dom 356 470
No external refs found!