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Aliases : CRR22
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00016p00259690 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At5g46460,... | 0.04 | OrthoFinder output from all 47 species | |
| AT4G14050 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g004398 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036834 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g058239 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g067033 | CRR21 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g078577 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g11836 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g14569 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g03812 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g03827 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g06363 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g55091 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g27260 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g02659 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g16640 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g17427 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g38565 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g68030 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0010.g012416 | No alias | not classified & original description: CDS=1-1722 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0027.g023505 | No alias | not classified & original description: CDS=32-2620 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0136.g050953 | No alias | not classified & original description: CDS=1-2220 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0251.g060294 | No alias | not classified & original description: CDS=1-879 | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0652.g081079 | No alias | not classified & original description: CDS=1-2169 | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g17429 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20683 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g29882 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g35085 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g45827 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g72789 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g08946 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g35980 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g36401 | OTP86 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g24574 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01021403001 | No alias | Pentatricopeptide repeat-containing protein At3g14730... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g60430.1 | LOC_Os01g60430 | RNA editing factor (MEF10) | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g56400.1 | LOC_Os03g56400 | Pentatricopeptide repeat-containing protein At2g22070... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os06g08650.1 | LOC_Os06g08650 | Pentatricopeptide repeat-containing protein At2g03380,... | 0.03 | OrthoFinder output from all 47 species | |
| Len_g20943 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Len_g47306 | OTP84 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g06227 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g06927 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g08907 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g08961 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g14573 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g24085 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g38056 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| MA_615077g0010 | No alias | Pentatricopeptide repeat-containing protein At3g12770... | 0.03 | OrthoFinder output from all 47 species | |
| MA_71104g0010 | CRR22 | Pentatricopeptide repeat-containing protein At3g12770... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g28692 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g04305 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g21730 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g24651 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g38538 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g03200 | REME1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g17481 | EMB2758 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g32824 | OSB3 | ssDNA-binding protein *(OSB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g33886 | CRR22 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g33905 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g34327 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g35308 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g35403 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g53554 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g59303 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59316 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g59344 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g59836 | EMB2758 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0133.g022243 | No alias | not classified & original description: CDS=1-1908 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g24307 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Solyc03g006990.1.1 | Solyc03g006990 | Pentatricopeptide repeat-containing protein At5g66520... | 0.04 | OrthoFinder output from all 47 species | |
| Solyc06g066080.1.1 | OTP85, Solyc06g066080 | Pentatricopeptide repeat-containing protein At4g21065... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g01102 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g15290 | VAC1, ECB2, ATECB2 | ssDNA-binding protein *(OSB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g30433 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e026664_P002 | Zm00001e026664 | RNA editing factor (BLX) | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEP | HCCA |
| BP | GO:0006325 | chromatin organization | IEP | HCCA |
| BP | GO:0006334 | nucleosome assembly | IEP | HCCA |
| BP | GO:0006338 | chromatin remodeling | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
| BP | GO:0034728 | nucleosome organization | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex organization | IEP | HCCA |
| CC | GO:0044815 | DNA packaging complex | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | HCCA |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR046848 | E_motif | 595 | 657 |
| IPR002885 | Pentatricopeptide_repeat | 352 | 377 |
| IPR002885 | Pentatricopeptide_repeat | 552 | 576 |
| IPR002885 | Pentatricopeptide_repeat | 251 | 274 |
| IPR002885 | Pentatricopeptide_repeat | 378 | 424 |
| IPR002885 | Pentatricopeptide_repeat | 74 | 123 |
| IPR002885 | Pentatricopeptide_repeat | 277 | 323 |
| IPR002885 | Pentatricopeptide_repeat | 175 | 222 |
| IPR002885 | Pentatricopeptide_repeat | 479 | 526 |
| No external refs found! |