1. Home
  2. Species
  3. Dicranopteris curranii
  4. Sequence
  5. Dcu_g06489

Dcu_g06489


Description : RNA helicase *(RCF1) & original description: none


Gene families : OG0003781 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003781_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g06489
Cluster HCCA: Cluster_175

Target Alias Description ECC score Gene Family Method Actions
AT1G20920 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
Ceric.37G065700.1 Ceric.37G065700 RNA helicase *(RCF1) & original description:... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.43 No alias RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
Cre16.g676400 No alias RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder output from all 47 species
GSVIVT01023849001 No alias DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os08g06344.2 LOC_Os08g06344 RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
MA_175476g0010 No alias RNA helicase (Prp5) 0.03 OrthoFinder output from all 47 species
Mp1g06750.1 No alias RNA helicase (Prp5) 0.02 OrthoFinder output from all 47 species
Ore_g10272 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g12514 No alias RNA helicase *(RCF1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e040204_P001 Zm00001e040204 RNA helicase (Prp5) 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0031369 translation initiation factor binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 714 822
IPR011545 DEAD/DEAH_box_helicase_dom 505 676
No external refs found!