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  5. Dcu_g05840

Dcu_g05840 (ATX1, SDG27)


Aliases : ATX1, SDG27

Description : class-III histone methyltransferase *(Trx) & original description: none


Gene families : OG0004303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004303_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05840

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00115800 SDG30, ATX2,... Chromatin organisation.histone modifications.histone... 0.05 OrthoFinder output from all 47 species
AT1G05830 SDG30, ATX2 trithorax-like protein 2 0.09 OrthoFinder output from all 47 species
Adi_g013424 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Aev_g04886 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Aev_g32400 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.08 OrthoFinder output from all 47 species
Ala_g02683 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Als_g15203 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Aob_g29671 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Aop_g20532 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene13214.t1 SDG30, ATX2,... class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0054.g033848 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Ceric.20G024500.1 SDG30, ATX2,... class-III histone methyltransferase *(Trx) & original... 0.09 OrthoFinder output from all 47 species
Cre03.g197700 SDG30, ATX2 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.01 OrthoFinder output from all 47 species
Dde_g51047 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g21792 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01013555001 ATX1, SDG27 Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_04715 No alias Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
Gb_27375 ATX1, SDG27 class III/Trithorax histone methyltransferase component... 0.05 OrthoFinder output from all 47 species
LOC_Os09g04890.1 SDG30, ATX2,... Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Lfl_g35891 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
MA_10428756g0010 ATX1, SDG27 Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp7g16780.1 SDG30, ATX2 Histone-lysine N-methyltransferase TRX1 OS=Oryza sativa... 0.05 OrthoFinder output from all 47 species
Msp_g13971 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.07 OrthoFinder output from all 47 species
Ore_g34686 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.03 OrthoFinder output from all 47 species
Pir_g12237 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0052.g013998 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.02 OrthoFinder output from all 47 species
Solyc09g098260.3.1 SDG30, ATX2,... Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Spa_g09107 ATX1, SDG27 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Tin_g22080 SDG30, ATX2 class-III histone methyltransferase *(Trx) & original... 0.04 OrthoFinder output from all 47 species
Zm00001e033644_P001 SDG30, ATX2,... class III/Trithorax histone methyltransferase component... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140612 DNA damage sensor activity IEP HCCA
MF GO:0140664 ATP-dependent DNA damage sensor activity IEP HCCA
InterPro domains Description Start Stop
IPR000313 PWWP_dom 766 852
IPR003888 FYrich_N 912 962
IPR001214 SET_dom 1420 1526
IPR003889 FYrich_C 972 1050
No external refs found!