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Description : XRN4-exoribonuclease cofactor *(LARP1) & original description: none
Gene families : OG0000608 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000608_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT5G21160 | No alias | LA RNA-binding protein | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g019211 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g020044 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g087231 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g107381 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g02674 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.07 | OrthoFinder output from all 47 species | |
| Ala_g04484 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Als_g14335 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g26663 | No alias | not classified & original description: none | 0.1 | OrthoFinder output from all 47 species | |
| Als_g38803 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g14550 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Aob_g16006 | No alias | not classified & original description: none | 0.09 | OrthoFinder output from all 47 species | |
| Aop_g06975 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Aspi01Gene62010.t2 | Aspi01Gene62010 | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0179.g056228 | No alias | not classified & original description: CDS=1-1593 | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g13843 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.29G060800.1 | Ceric.29G060800 | not classified & original description: pacid=50624742... | 0.1 | OrthoFinder output from all 47 species | |
| Ceric.29G061100.1 | Ceric.29G061100 | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.1 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000498.93 | No alias | No description available | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g10054 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g07929 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.04 | OrthoFinder output from all 47 species | |
| Ehy_g07940 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_04152 | No alias | La-related protein 1C OS=Arabidopsis thaliana... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os01g16110.1 | LOC_Os01g16110 | XRN4-exoribonuclease cofactor (LARP1) | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g02117 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Lfl_g07864 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| MA_113816g0010 | No alias | La-related protein 1A OS=Arabidopsis thaliana... | 0.04 | OrthoFinder output from all 47 species | |
| MA_162692g0010 | No alias | XRN4-exoribonuclease cofactor (LARP1) | 0.02 | OrthoFinder output from all 47 species | |
| MA_1763g0010 | No alias | La-related protein 1A OS=Arabidopsis thaliana... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g19204 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g44181 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g10955 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29292 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g13658 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g27548 | No alias | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Sam_g27980 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc02g061980.3.1 | Solyc02g061980 | La-related protein 1C OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g50019 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g46280 | No alias | XRN4-exoribonuclease cofactor *(LARP1) & original... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e025537_P001 | Zm00001e025537 | XRN4-exoribonuclease cofactor (LARP1) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | HCCA |
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0003972 | RNA ligase (ATP) activity | IEP | HCCA |
| MF | GO:0004402 | histone acetyltransferase activity | IEP | HCCA |
| MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005524 | ATP binding | IEP | HCCA |
| CC | GO:0005667 | transcription regulator complex | IEP | HCCA |
| CC | GO:0005669 | transcription factor TFIID complex | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006352 | DNA-templated transcription initiation | IEP | HCCA |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | HCCA |
| BP | GO:0006399 | tRNA metabolic process | IEP | HCCA |
| BP | GO:0006473 | protein acetylation | IEP | HCCA |
| BP | GO:0006475 | internal protein amino acid acetylation | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0008033 | tRNA processing | IEP | HCCA |
| MF | GO:0008080 | N-acetyltransferase activity | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008233 | peptidase activity | IEP | HCCA |
| MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
| BP | GO:0008380 | RNA splicing | IEP | HCCA |
| MF | GO:0008452 | RNA ligase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016407 | acetyltransferase activity | IEP | HCCA |
| MF | GO:0016410 | N-acyltransferase activity | IEP | HCCA |
| MF | GO:0016462 | pyrophosphatase activity | IEP | HCCA |
| BP | GO:0016570 | histone modification | IEP | HCCA |
| BP | GO:0016573 | histone acetylation | IEP | HCCA |
| BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | HCCA |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | HCCA |
| MF | GO:0016887 | ATP hydrolysis activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| MF | GO:0017111 | ribonucleoside triphosphate phosphatase activity | IEP | HCCA |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | HCCA |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | HCCA |
| BP | GO:0018393 | internal peptidyl-lysine acetylation | IEP | HCCA |
| BP | GO:0018394 | peptidyl-lysine acetylation | IEP | HCCA |
| MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
| MF | GO:0030527 | structural constituent of chromatin | IEP | HCCA |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | HCCA |
| MF | GO:0034212 | peptide N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| BP | GO:0036211 | protein modification process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
| BP | GO:0043412 | macromolecule modification | IEP | HCCA |
| BP | GO:0043543 | protein acylation | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| MF | GO:0061733 | peptide-lysine-N-acetyltransferase activity | IEP | HCCA |
| BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
| BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| CC | GO:0090575 | RNA polymerase II transcription regulator complex | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| MF | GO:0140657 | ATP-dependent activity | IEP | HCCA |
| MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR006630 | La_HTH | 434 | 488 |
| No external refs found! |