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  5. Dcu_g05318

Dcu_g05318 (RNPS1, SR45)


Aliases : RNPS1, SR45

Description : component *(RNPS1) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0002814 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Dcu_g05318

Target Alias Description ECC score Gene Family Method Actions
Adi_g113272 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Aev_g05804 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Als_g12115 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Ceric.19G041100.1 RNPS1, SR45,... component *(RNPS1) of RNA quality control Exon Junction... 0.05 OrthoFinder output from all 47 species
Dac_g22440 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
Ehy_g01393 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.04 OrthoFinder output from all 47 species
LOC_Os01g72890.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Len_g07514 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Lfl_g18973 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.06 OrthoFinder output from all 47 species
Pir_g15172 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Ppi_g18401 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species
Sam_g26477 No alias component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Solyc10g005590.4.1 RNPS1, SR45,... component RNPS1 of RNA quality control Exon Junction complex 0.04 OrthoFinder output from all 47 species
Spa_g07702 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Spa_g10767 RNPS1, SR45 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g01053 RNPS1, SR45 component *(RNPS1) of RNA quality control Exon Junction... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 108 176
No external refs found!